3c
There are 0 repository under 3c topic.
koszullab / instaGRAAL
Large genome reassembly based on Hi-C data, continuation of GRAAL
Language:Cuda 38- Language:Python 35
kundajelab / genomedisco
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
Language:Jupyter Notebook 25- metaTORLanguage:Python 20
sienkiewiczkm / milling-simulator
Simple 3C milling simulator with path generation module.
Language:C++ 11- serpentineLanguage:Python 5
- Language:Python 4
skkap / mdsga
Tool for chromatin 3D structure reconstruction from 3C experimental data. Improvement of ShRec3D.
Language:Python 3YoussefAyachii / HiCDataAnalysis
Using chromatin-chromatin interaction scores generated by the Capture Hi-C technology, I developed this R code during my six week internship in the Spicuglia lab, part of the INSERM institute (TAGC) related to the Aix-Marseille University, France, in order to identify the DNA interactions happening between different regions, specifically the interaction of the OAS3 Epromoter with its target promoters OAS1 and OAS2, before and after IFN alpha stress stimulation and then to figure out the changes of the 3D chromatin organization upon this stress stimulation.
- Language:Python
- Language:CSS
- Language:CSS
