IMCF's repositories
lxc-scripts
:truck: :construction: Scripts and stuff to automatically create LXC containers in various flavours.
rlm-prometheus
Prometheus exporter providing metrics from a Reprise License Manager (RLM) instance.
imcf-fiji-scripts
:wrench: :memo: :coffee: :microscope: Scripts for Fiji provided by the Imaging Core Facility, Biozentrum, University of Basel
nvsmi-prometheus-textfile
A zero-dependencies metrics collector for Prometheus based on "nvidia-smi" written in Python.
python-micrometa
:coffee: :snake: :microscope: Package for processing metadata from various light-microscopy related data formats.
citrix_collector
PowerShell based collector of Citrix metrics for Prometheus (creating a textfile for the windows_exporter).
jython-scijava-logging
:snake::coffee::bookmark_tabs: Jython package for using SciJava's LogService for logging.
python-imcflibs
🐍 ☕ 🔩 🔧 🪛 A collection of commonly used Python helper functions.
ArgoLight_analysis_tool
Code to control the quality of images taken with our microscopes
Baysor
Bayesian Segmentation of Spatial Transcriptomics Data
ijl-utilities-wrappers
Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
imcf-fiji-mocks
Python mocks 🧌 providing dummy imports e.g. for testing the IMCF Fiji Python packages.
imcf.github.io
IMCF github pages
ipmitool-prometheus-textfile
Wrapper for the "ipmitool" Prometheus textfile collector.
logging-interceptor
Code to integrate Loguru with Python's standard logging module
multiview-reconstruction
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
omero-py
Python project containing Ice remoting code for OMERO
OMERO.forms
Extension to OMERO.web to enhance metadata input and provide provenance
vpt-core
Core components of the Vizgen Post-processing Tool
vpt-plugin-cellpose
Cellpose plugin for the Vizgen Post-processing Tool