cross-linking

There are 0 repository under cross-linking topic.

mkdocstrings / autorefs
Automatically link across pages in MkDocs.
mkdocs mkdocs-plugin cross-linking cross-references anchor mkdocstrings
Language:Python 54
pFindStudio / pLink2
pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.
bioinformatics cross-linking mass-spectrometry proteomics
Language:C++ 22
ScheltemaLab / ChimeraX_XMAS_bundle
chimerax cross-linking mapping
Language:Python 14
hgb-bin-proteomics / MSAnnika
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
cross-linking crosslinker crosslinking mass mass-spectrometry ms2 ms3 search-engine spectrometry tandem-ms xlms proteomics
6
hgb-bin-proteomics / MSAnnika_exporters
Export MS Annika crosslink results to different formats.
cross-linking crosslinking mass mass-spectrometry spectrometry xlms crosslinker ms2 ms3 python tandem-ms visualization proteomics
Language:Python 3
fcyu / ECL2
A fast and exhaustive cross-linked peptides identification tool.
cross-linked-peptides cross-linking peptide-identification
Language:Java 2
achattaraj / CondensateMerger
Simulation scripts used in the study "Separation of sticker-spacer energetics governs the coalescence of metastable biomolecular condensates"
condensates cross-linking lammps langevin-dynamics llps metastability phase-separation polymer-physics
Language:Jupyter Notebook 1
hgb-bin-proteomics / MaXLinker_extensions
Extensions for better usability of the cross-linking tool MaXLinker.
cross-linking crosslinking mass mass-spectrometry spectrometry xlms crosslinker ms2 ms3 python tandem-ms proteomics
Language:Python 1
hgb-bin-proteomics / MSAnnika_CSM_Annotation
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
annotation cross-linking crosslinker crosslinking fragment-ions mass mass-spectrometry ms2 ms3 python spectrometry tandem-ms doublet-ions xlms proteomics
Language:Python 1
integrativemodeling / nup82
Modeling of the Nup82 subcomplex of the Nuclear Pore Complex
comparative-models cross-linking electron-microscopy integrative-modeling x-ray-crystallography small-angle-xray-scattering
Language:Python 1
integrativemodeling / sea
Modeling of the SEA complex
comparative-models cross-linking electron-microscopy integrative-modeling x-ray-crystallography
Language:HTML 1
hgb-bin-proteomics / Crosslink_Utils
Helper scripts for crosslink analysis.
cross-linking crosslinker crosslinking mass mass-spectrometry python spectrometry xlms proteomics
Language:Python 0
hgb-bin-proteomics / MSAnnika_Extensions
List of all available extensions for our cross-linking search engine MS Annika.
cross-linking crosslinker crosslinking extension mass mass-spectrometry ms2 ms3 proteomics search-engine spectrometry tandem-ms xlms
0
hgb-bin-proteomics / MSAnnika_FDR
A script and functions to group and validate MS Annika results.
cross-linking crosslinker crosslinking discovery false false-discovery-rate fdr mass mass-spectrometry proteomics python rate spectrometry tandem-ms xlms validation
Language:Python 0
hgb-bin-proteomics / MSAnnika_MS3_Results
Results and Evaluation of the MS3 Search Algorithm of MS Annika.
cross-linking mass-spectrometry search-engine ms3 tandem-ms crosslinker crosslinking mass spectrometry xlms
Language:Jupyter Notebook 0
hgb-bin-proteomics / MSAnnika_Spectral_Library_exporter
Generate a spectral library for Spectronaut from MS Annika results.
cross-linking crosslinker crosslinking fragment-ions fragments library mass mass-spectrometry ms2 python spectral spectral-library spectrometry spectronaut tandem-ms xlms proteomics
Language:Python 0
integrativemodeling / 26S-PIPs
Modeling the structures of complexes between the 26S proteasome and proteasome interacting proteins
comparative-models cross-linking integrative-modeling proteasome
Language:Python 0
integrativemodeling / nup84
Modeling of the Nup84 subcomplex of the Nuclear Pore Complex
comparative-models cross-linking electron-microscopy integrative-modeling x-ray-crystallography
Language:Python 0
integrativemodeling / pol_ii_g
Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1
integrative-modeling cross-linking
Language:Python 0
integrativemodeling / tfiih
Modeling of the TFIIH complex using chemical cross-links and electron microscopy (EM) density maps
integrative-modeling cross-linking electron-microscopy comparative-models
Language:Python 0
hgb-bin-proteomics / MSAnnika_Combine_Results
A script to merge and optionally validate several MS Annika search results.
combine cross-linking crosslinker crosslinking join mass mass-spectrometry merge proteomics python spectrometry tandem-ms xlms
Language:Python
integrativemodeling / Complement
Human complement modeling
integrative-modeling complement cross-linking
Language:Python
integrativemodeling / mediator
Modeling of the yeast Mediator complex
integrative-modeling comparative-models cross-linking electron-microscopy x-ray-crystallography
Language:Python
michabirklbauer / apmrs2022
Short Talk Presentation for APMRS 2022
cross-linking mass mass-spectrometry spectrometry crosslinking crosslinker xlms
michabirklbauer / apmrs2024
Short talk presentation, poster and abstract for APMRS-CEEPC 2024
cross-linking crosslinker crosslinking mass mass-spectrometry spectrometry xlms
napobear / mzt
My Z80 Tools - Credits to Piergiorgio Betti - https://www.z80cpu.eu/projects/78-data-articles/projects/76-mdz80
retrocomputing z80 z80-assembler cross-assembler cross-linking
Language:C
sdiebolt / simple-xquest
A bash script that simplifies the installation and setup of the xQuest/xProphet pipeline and creates a directory structure to ensure an easy use. Command-line beginner friendly.
bioinformatics bash bash-script cross-linking cross-linked-peptides mass-spectrometry espci-paris
Language:Shell

cross-linking

mkdocstrings / autorefs

pFindStudio / pLink2

ScheltemaLab / ChimeraX_XMAS_bundle

hgb-bin-proteomics / MSAnnika

hgb-bin-proteomics / MSAnnika_exporters

fcyu / ECL2

achattaraj / CondensateMerger

hgb-bin-proteomics / MaXLinker_extensions

hgb-bin-proteomics / MSAnnika_CSM_Annotation

integrativemodeling / nup82

integrativemodeling / sea

hgb-bin-proteomics / Crosslink_Utils

hgb-bin-proteomics / MSAnnika_Extensions

hgb-bin-proteomics / MSAnnika_FDR

hgb-bin-proteomics / MSAnnika_MS3_Results

hgb-bin-proteomics / MSAnnika_Spectral_Library_exporter

integrativemodeling / 26S-PIPs

integrativemodeling / nup84

integrativemodeling / pol_ii_g

integrativemodeling / tfiih

hgb-bin-proteomics / MSAnnika_Combine_Results

integrativemodeling / Complement

integrativemodeling / mediator

michabirklbauer / apmrs2022

michabirklbauer / apmrs2024

napobear / mzt

sdiebolt / simple-xquest