phase-separation

There are 1 repository under phase-separation topic.

• rajeshrinet / pystokes

  PyStokes: phoresis and Stokesian hydrodynamics in Python. github.com/rajeshrinet/pystokes

  active-colloidsactive-particlesautophoretic-suspensionscolloidscrystallizationcythonforce-fieldshydrodynamic-interactionsphase-separationphoretic-interactionspystokespythonstokes-flowstokesian-hydrodynamicstraction
  Language:Cython 47

• rajeshrinet / pygl

  PyGL: statistical field theory in Python. github.com/rajeshrinet/pygl

  active-scalar-field-theorybinary-mixturescahn-hilliarddroplet-growthfield-theoretic-simulationsginzburg-landaulandau-theorynucleationphase-separationphase-transitionpyglpythonspinodal-decomposition
  Language:Jupyter Notebook 28

• achattaraj / OptimalCondensateSize

  Multi-condensate state as a functional strategy to optimize the cell signaling output

  biophysicscondensateslangevin-dynamicsllpsode-modelreaction-diffusionsystems-biologymultiple-condensatessignaling-condensateslammpspythonvcellphase-separationphase-transition
  Language:Jupyter Notebook 2

• liuqx315 / PS-Resilience-in-Ecosystems

  ecosystemspatternsphase-separationself-organization
  Language:Jupyter Notebook 2

• Pappulab / damfret_classifier

  This is a Python package for classifying DAmFRET data based on supervised learning. The data can also be analyzed to allow mechanistic inferences regarding nucleation of ordered assemblies.

  proteinsphase-separationclassification-algorithmsupervised-learningmechanistic-inferencenucleationordered-assemblies
  Language:Python 2

• achattaraj / CondensateMerger

  Simulation scripts used in the study "Separation of sticker-spacer energetics governs the coalescence of metastable biomolecular condensates"

  condensateslammpslangevin-dynamicsllpsmetastabilityphase-separationpolymer-physicscross-linking
  Language:Jupyter Notebook 1

• mmaleki92 / PCA-Ising

  Studying the Ising model phase transition using PCA.

  mlpcaphase-separation
  Language:Jupyter Notebook 1

• Pappulab / King-etal-Nucleoli

  This GitHub repository contains the code and data for the manuscript "Macromolecular Condensation Organizes Nucleolar Sub-Phases to Set Up a pH Gradient." Available at SSRN: https://ssrn.com/abstract=4520791 or http://dx.doi.org/10.2139/ssrn.4520791

  biophysicscondensatesnucleolusphase-separation
  Language:Jupyter Notebook 1

• Pappulab / dynamical-control

  This GitHub repository contains the code and data for the manuscript "Dynamical control enables the formation of demixed biomolecular condensates" (BioRxiv link: https://www.biorxiv.org/content/10.1101/2023.01.04.522702v1)

  computational-biophysicscondensatesphase-separationdynamical-control
  Language:Jupyter Notebook