crosslinker

There are 0 repository under crosslinker topic.

hgb-bin-proteomics / MSAnnika
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of MS2-cleavable crosslinkers from MS2 and MS3 spectra.
cross-linking crosslinker crosslinking mass mass-spectrometry ms2 ms3 search-engine spectrometry tandem-ms xlms proteomics
6
hgb-bin-proteomics / MaXLinker_extensions
Extensions for better usability of the cross-linking tool MaXLinker.
cross-linking crosslinking mass mass-spectrometry spectrometry xlms crosslinker ms2 ms3 python tandem-ms proteomics
Language:Python 1
hgb-bin-proteomics / MSAnnika_CSM_Annotation
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
annotation cross-linking crosslinker crosslinking fragment-ions mass mass-spectrometry ms2 ms3 python spectrometry tandem-ms doublet-ions xlms proteomics
Language:Python 1
hgb-bin-proteomics / MSAnnika_exporters
Export MS Annika crosslink results to different formats.
cross-linking crosslinking mass mass-spectrometry spectrometry xlms crosslinker ms2 ms3 python tandem-ms visualization proteomics
Language:Python 1
hgb-bin-proteomics / Crosslink_Utils
Helper scripts for crosslink analysis.
cross-linking crosslinker crosslinking mass mass-spectrometry python spectrometry xlms proteomics
Language:Python 0
hgb-bin-proteomics / MSAnnika_Extensions
List of all available extensions for our cross-linking search engine MS Annika.
cross-linking crosslinker crosslinking extension mass mass-spectrometry ms2 ms3 proteomics search-engine spectrometry tandem-ms xlms
0
hgb-bin-proteomics / MSAnnika_FDR
A script and functions to group and validate MS Annika results.
cross-linking crosslinker crosslinking discovery false false-discovery-rate fdr mass mass-spectrometry proteomics python rate spectrometry tandem-ms xlms validation
Language:Python 0
hgb-bin-proteomics / MSAnnika_MS3_Results
Results and Evaluation of the MS3 Search Algorithm of MS Annika.
cross-linking mass-spectrometry search-engine ms3 tandem-ms crosslinker crosslinking mass spectrometry xlms
Language:Jupyter Notebook 0
hgb-bin-proteomics / MSAnnika_Spectral_Library_exporter
Generate a spectral library for Spectronaut from MS Annika results.
cross-linking crosslinker crosslinking fragment-ions fragments library mass mass-spectrometry ms2 python spectral spectral-library spectrometry spectronaut tandem-ms xlms proteomics
Language:Python 0
hgb-bin-proteomics / Scout_extensions
Extensions to use the cross-linking tool Scout with other software.
cross-linking crosslinker crosslinking mass mass-spectrometry ms2 python spectrometry tandem-ms xlms proteomics
Language:Python 0
hgb-bin-proteomics / MSAnnika_Combine_Results
A script to merge and optionally validate several MS Annika search results.
combine cross-linking crosslinker crosslinking join mass mass-spectrometry merge proteomics python spectrometry tandem-ms xlms
Language:Python
michabirklbauer / apmrs2022
Short Talk Presentation for APMRS 2022
cross-linking mass mass-spectrometry spectrometry crosslinking crosslinker xlms