coral-reefs

There are 1 repository under coral-reefs topic.

• cnr-isti-vclab / TagLab

  A CNN based image segmentation tool oriented to marine data analysis

  image-segmentationlabelssemanticcoralsmarine-data-analysispythoncnncoral-reefsunderwater-monitoringsemantic-segmentationannotation-toollabeling-tool
  Language:Python 71

• Jordan-Pierce / CoralNet-Toolbox

  A repository containing tools useful for interacting with CoralNet and other downstream tasks.

  crawlerimage-classificationsemantic-segmentationcoralnetcoral-reefsmachine-learningstructure-from-motion
  Language:Python 9

• JordanMakesMaps / 3D-Model-Classification

  A repo for the paper titled, "Classifying 3D Models of Coral Reefs using Structure-from-Motion and Multiview Semantic Segmentation"; here we provide a walkthrough of the workflow and open-sourced code.

  semantic-segmentationkerascoral-reefsdense-annotationscomputer-vision3-modelstructure-from-motion
  Language:Jupyter Notebook 8

• JWicquart / gcrmndb_benthos

  Code repository for the GCRMN benthic synthetic dataset

  benthoscoral-reefsgcrmnicrimonitoring
  Language:R 6

• JWicquart / fish_growth

  Individual back-calculated size-at-age based on otoliths from Pacific coral reef fish species

  fish-growthotolithback-calculationcoral-reefs
  Language:HTML 5

• cnr-isti-vclab / DeeplabV3-for-Corals

  This code is part of a bigger project about the semantic segmentation of coral reefs for ecological monitoring.

  coral-reefsdeeplab-v3-plusecological-modelingsemantic-segmentationunderwater-monitoring
  Language:Python 3

• JWicquart / monitoring_reefs

  Coral reefs benthic monitoring: spatio-temporal distribution, methods and stakeholders

  coral-reefsgcrmnmonitoring
  Language:R 3

• Aadya178 / NOAA-Check-Reef-Bleaching

  An analysis of the factors that have affected the bleaching of coral reefs across a span of 20 years in different oceans around the globe.

  pythonmachine-learningdata-scienceenvironmentcoral-reefscoral-reef-bleachinglogistic-regressionk-fold-cross-validationjupyter-notebooknature
  Language:Jupyter Notebook 2

• Anushka-Punukollu / SeaBloom

  SeaBloom uses AI models (CNNs and RNNs) + LiDAR to detect and pinpoint healthy corals to later selectively breed and transplant.

  artificial-intelligencecoral-bleachingcoral-reefsdeep-learning
  Language:Jupyter Notebook 2

• hannahbarkley / reefbudgetR

  Tools for processing Pacific NCRMP carbonate budgets data

  calcificationcoralcoral-reefserosionparrotfishurchincarbonate-budgetsreefbudget
  Language:R 2

• Jordan-Pierce / Benthic-Toolbox

  Repository for creating object detection and instance segmentation models for deep-sea benthic habitats.

  benthiccoral-reefsinstance-segmentationmachine-learningobject-detectionpythontator
  Language:Python 2

• Jordan-Pierce / SfM_Back_Projection

  Workflow for creating classified Structure from Motion models using Agisoft Metashape.

  machine-learning3d-reconstruction3d-semantic-segmentationagisoft-metashapecoral-reefsstructure-from-motion
  Language:Python 2

• CourtneyStuart / FL_Patch_Reefs

  What drives spatial patterns of sub-adult gray snapper and bluestriped grunt abundances on coral patch reefs off the Florida Keys, USA? 🐠🌊

  connectivitycoral-reefsreef-fishflorida-keysseascape-ecology
  Language:R 1

• eelabfiu / seasonal_PR

  This repository contains methylation AFLP data as employed in Rodríguez-Casariego et al., Frontiers in Marine Sciences, 2020: "Genome-wide DNA methylation analysis reveals a conserved epigenetic response to seasonal environmental variation in the staghorn coral Acropora cervicornis"

  coral-reefsepigeneticsseasonality
  1

• GrantHough / Corally

  Rallying together to gather and spread intel on the health of corals and provide coral reef organizations with up-to-date information using ML. (hackathon winner)

  machine-learningcoral-reefs
  Language:Jupyter Notebook 1

• henryxsong / Coral-Reefsearchers

  Effects of Overfishing on Coral Reef Ecosystems

  differential-equationsresearchcoral-reefsmodelinggame-theoryepscorgeccoguamparrotfishuniversity-of-guamuogcompartmental-models
  Language:TeX 1

• jason-rietzke / CoralReef

  experimental perlin-noise weekend-project ends up being a mesmerising screensaver

  screensaverperlin-noisecolorfulcoral-reefslaval-lampwavyanimations
  Language:JavaScript 1
• Coral-Death

  jeibloo / Coral-Death

  Visualize and predict the death of the coral reefs.

  bleachingcoral-reefsocean
  Language:Python 1

• JWicquart / gcrmn_ctry

  Status of coral reef monitoring: An assessment of methods and data at the national level

  coral-reefsmonitoringgcrmnicri
  Language:R 1

• JWicquart / monitoring_workflow

  A workflow to integrate ecological monitoring data from different sources

  coral-reefsdata-integrationecologymeta-analysismonitoringworkflow
  Language:HTML 1
• hawaii-coral-bleaching-2019

  morgan-winston / hawaii-coral-bleaching-2019

  This repository contains code used in the analysis of coral bleaching survey data collected across the Hawaiian Archipelago during the 2019 bleaching event. We investigated spatial, temporal, and taxa-specific variability in bleaching, as well as drivers of the event. See README for more information on downloading archived data.

  climate-changecoral-bleachingcoral-reefshawaiistatistical-analysis
  Language:R 1
• HerbivoreForageScaling

  bioTIMEHub / HerbivoreForageScaling

  Study on the role of body size, species identity, and functional traits on foraging area of herbivorous reef fishes

  reef-fishcoral-reefsecologyforagingallometry
  Language:R 0

• ChiaraDuijser / host-symbiont_interactions_environmental_gradient

  R code for reproducing analysis and figures of Pocillopora host-symbiont interactions along an extreme environmental gradient

  coral-reefsenvironmental-extremespopulation-geneticssymbiodiniaceae
  0

• JayCrlt / Allometric_coral_growth

  This repository corresponds to the study: Carlot et al. (2021). Juvenile corals underpin coral reef carbonate production after disturbance. Global Change Biology. https://doi.org/10.1111/gcb.15610

  juvenile-coralscoral-reefssea-level-risereefsdisturbances
  Language:R 0

• JayCrlt / Coral_Physiology

  This repository corresponds to the study: Carlot et al. (2022). Scaling up calcification, respiration, and photosynthesis rates of six prominent coral taxa. Ecology and Evolution. https://doi.org/10.1002/ece3.8613

  ecologyphysiologycoral-reefsscaling-upfunctionality
  Language:R 0

• JWicquart / ea_resilience

  Hard coral cover resilience in the Coral Triangle in a context of global decline

  coral-reefseast-asian-seasgcrmnrecoveryresistance
  Language:R 0

• laurianeribas-deulofeu / laurianeribas-deulofeu.github.io

  Dr. Lauriane Ribas-Deulofeu Website

  coralecologyreefsacademiabenthic-habitatbenthosbleachingclimate-changecoral-reefsfieldworkresearchtyphoon
  Language:HTML 0

• lukaseamus / DIMRS

  Data and R code accompanying article 10.1002/aqc.3814 in Aquatic Conservation: Marine and Freshwater Ecosystems.

  aquatic-conservationartisanal-fisheriesconservation-biologyconservation-planningcoral-conservationcoral-morphologycoral-reefsdisturbancediversityevennessfishingmanagement-strategiesmarine-biologymarine-conservationmarine-ecologymarine-ecosystemmarine-protected-areamarine-reservemultivariate-analysistidyverse
  Language:R 0

• Mcouedel / mcouedel.github.io

  Dr Marion Couëdel's personal website

  coral-reefsmetabarcodingmolecular-ecology
  Language:HTML 0

• morgan-winston / coralnet-bleaching-classifier-development

  This repository contains code used to develop an automated bleaching classifier in CoralNet (https://coralnet.ucsd.edu). See README for overview of code, and link to more information on the development of the classifier.

  automationcoral-bleachingcoral-reefsimage-analysis
  Language:R 0

• Rare-Technology / ECO_Dashboard

  Ecological surveys dashboard

  coral-reefsdashboarddata-analysisdata-visualizationecologymangrovesmarine-ecologyngonon-profitseagrassshiny
  Language:R 0

• sroitman / Varadero_coral_microbiome

  All code and analyses performed for: Roitman, S., López-Londoño, T., Joseph Pollock, F. et al. Surviving marginalized reefs: assessing the implications of the microbiome on coral physiology and survivorship. Coral Reefs 39, 795–807 (2020).

  microbiome-analysis16s-rrnacoral-reefs
  0

• systems-genomics-lab / coral-microbiome-review

  The coral microbiome: Towards an understanding of the molecular mechanisms of coral-microbiota interactions

  climate-changecoralcoral-reefsgenomicsmetagenomicsmicrobiome
  Language:Shell 0

• aaronleetw / cyberfair-2023

  A website for the International CyberFair 2023. It was the first project I built using Astro. This was my third time participating in the CyberFair. This project won the Gold Award.

  2023coralcoral-reefscyberfairenvironment
  Language:JavaScript

• agimenezromero / Coral-Reef-Analysis

  Analysis of the Allen Coral Atlas database on shallow-water tropical reefs worldwide

  biogeographycoral-reefsmacroecologyecology
  Language:Python

• open-AIMS / MA-GBR-analyses

  R scripts for 'Macroalgal cover on coral reefs: spatial, environmental and biotic predictors, and decadal trends in the Great Barrier Reef'

  macroalgaemacrophytecoralgreat-barrier-reefenvironmental-predictorscoral-reefs
  Language:R