Hard coral cover resilience in the Coral Triangle in a context of global decline

This repository contains code associated to the article:

Wicquart, J. et al. (in prep.). Hard coral cover resilience in the Coral Triangle in a context of global decline.

1. Abstract

[To complete]

2. How to download this project?

On the project main page on GitHub, click on the green button Code and then click on Download ZIP

3. Datasets used

2020 GCRMN modeled hard coral cover trends
Natural Earth Data
Coral Reef Watch

4. Code description

00_site-coordinates.R
01_extract_dhw-percent.R
02_figure-1.R
03_figure-2.R
04_figure-3.R
05_figure-4.R
06_supp-figure-1.R
07_supp-figure-2.R
📁 functions
- data_cleaning.R
- data_cleaning.R
- data_cleaning.R Graphical parameters

5. How to report issues?

Please report any bugs or issues HERE.

6. Reproducibility parameters

R version 4.3.1 (2023-06-16 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)

Matrix products: default


locale:
[1] LC_COLLATE=French_France.utf8  LC_CTYPE=French_France.utf8   
[3] LC_MONETARY=French_France.utf8 LC_NUMERIC=C                  
[5] LC_TIME=French_France.utf8    

time zone: Europe/Paris
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] tidytext_0.4.1  ggtext_0.1.2    patchwork_1.1.3 furrr_0.3.1    
 [5] future_1.33.0   terra_1.7-46    sf_1.0-14       magrittr_2.0.3 
 [9] lubridate_1.9.3 forcats_1.0.0   stringr_1.5.0   dplyr_1.1.3    
[13] purrr_1.0.2     readr_2.1.4     tidyr_1.3.0     tibble_3.2.1   
[17] ggplot2_3.4.3   tidyverse_2.0.0

loaded via a namespace (and not attached):
 [1] gtable_0.3.4       xfun_0.40          lattice_0.21-8     tzdb_0.4.0        
 [5] vctrs_0.6.3        tools_4.3.1        generics_0.1.3     parallel_4.3.1    
 [9] proxy_0.4-27       fansi_1.0.4        janeaustenr_1.0.0  tokenizers_0.3.0  
[13] pkgconfig_2.0.3    Matrix_1.6-1.1     KernSmooth_2.23-22 lifecycle_1.0.3   
[17] compiler_4.3.1     munsell_0.5.0      codetools_0.2-19   SnowballC_0.7.1   
[21] htmltools_0.5.6    class_7.3-22       yaml_2.3.7         pillar_1.9.0      
[25] classInt_0.4-10    parallelly_1.36.0  tidyselect_1.2.0   digest_0.6.33     
[29] stringi_1.7.12     listenv_0.9.0      fastmap_1.1.1      grid_4.3.1        
[33] colorspace_2.1-0   cli_3.6.1          utf8_1.2.3         e1071_1.7-13      
[37] withr_2.5.1        scales_1.2.1       timechange_0.2.0   rmarkdown_2.25    
[41] globals_0.16.2     hms_1.1.3          evaluate_0.22      knitr_1.44        
[45] rlang_1.1.1        gridtext_0.1.5     Rcpp_1.0.11        glue_1.6.2        
[49] DBI_1.1.3          xml2_1.3.5         rstudioapi_0.15.0  R6_2.5.1          
[53] units_0.8-4

JWicquart / ea_resilience