hybridization

There are 0 repository under hybridization topic.

• pblischak / HyDe

  Hybridization detection using phylogenetic invariants

  hybridizationphylogenomicsphylogenetic-networkspython-packagecython
  Language:Python 39

• jbpease / dfoil

  DFOIL: Introgression Testing for Five Taxa

  introgressionhybridizationphylogeneticsmolecular-evolution
  Language:Python 27

• btmartin721 / ClineHelpR

  Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables

  genomic-clinebgcintrogressionintrogressrr-packagechromosomeideogramenmevalmaxentrasterplothybridizationhybrid-zone
  Language:R 16

• pblischak / hyde-cnn

  Hybridization Detection with Convolutional Neural Networks

  phylogenomicshybridizationdeep-learningconvolutional-neural-networkspython3
  Language:Python 9

• gridap / GridapHybrid.jl

  Hybrid discretisation methods in Julia (VEM, HDG, HHO, etc) :construction: :construction: :construction: Work in progress :construction: :construction::construction:

  julianumerical-methodsfinite-element-methodshybridization
  Language:Julia 6

• sangttruong / hybcast

  Hybridization approach for time-series forecasting

  econometricsforecastinghybridizationtime-series
  Language:Jupyter Notebook 3

• volpatto / porousdrake

  Suitable Finite Element methods for Porous Media flow using Firedrake Project framework

  femfinite-element-methodsfinite-element-analysisporous-media-flowhybridizationdiscontinuous-galerkin
  Language:Python 3

• btmartin721 / phylip2eigenstrat

  Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile

  admixtoolseigenstratradddradhybridizationintrogressionf-statisticsd-statisticadmixturepopulation-geneticspopulation-genomicsrad-sequencingddrad-sequencingpyradgenophylipsnpsind
  Language:Python 2

• johannessonlab / Letharia

  All scripts and pipelines related to inferring ploidy, hybridization and MAT locus architecture in the lichen symbionts from the genus Letharia

  uppmaxgenome-annotationfungilichenploidyhybridization
  Language:R 1

• rtfcoimbra / Coimbra-et-al-2023_BMCBiol

  Code used to analyse WGS data of giraffe in Coimbra et al. 2023

  bioinformaticsgene-flowgenomicsgiraffehybridizationintrogressionpopulation-genomicsspeciation
  Language:R 1

• btmartin721 / makePopMap

  Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files

  structurepopulation-genomicspopulation-geneticspopulation-structureadmixtureintrogressionhybridizationphylipplink-filespopmappedigreestructure-file
  Language:Python 0

• LuisRodrigoArce-Valdes / Climate_Change_Hybridization

  Back up for the review and scripts used in the article "The evolutionary outcomes of climate-change-induced hybridization in insect populations." published in COIS,

  climate-changecoihybridizationinsects
  Language:R 0

• LuisRodrigoArce-Valdes / Insect_Hybridization_CC

  This repository contains raw data and scripts for the "Interspecific hybridization in insects in times of climate change" book chapter included in the book "Effects of Climate Change on Insects" by González-Tokman and Dáttilo.

  climate-changehybridizationinsects
  Language:R 0

• ctlab / hammlet

  Hybridization Models Maximum Likelihood Estimator

  maximum-likelihood-estimationphylogenyhybridization
  Language:Python

• pblischak / evol2017

  Tutorial, code, and data for Evolution 2017

  jupyter-notebookpython27tutorialhybridization
  Language:Jupyter Notebook

• pinskylab / arg_coral_reefs

  Code to accompany Pinsky et al. 2023 Coral Reef Population Genomics in an Age of Global Change. Annual Review of Genetics

  coraldispersaldriftgeneticsgenomicshybridizationpopulationselection
  Language:R

• TransGirlCodes / PhD_Thesis

  The LaTeX source for my PhD Thesis, the viva for which took place in September, 2016.

  thesisphd-thesispopulation-geneticspopulation-genomicshybridizationrecombination
  Language:TeX