cell-tracking
There are 4 repositories under cell-tracking topic.
- btrack
quantumjot / btrack
Bayesian multi-object tracking
Language:Python 299 - Language:Python 61
WenChentao / 3DeeCellTracker
A python algorithm for tracking cells in 3D time lapse images.
Language:Python 43lowe-lab-ucl / arboretum
Track and lineage visualization with btrack and Napari :evergreen_tree:
Language:Python 42SAIL-GuoLab / Cell_Segmentation_and_Tracking
For cell segmentation and tracking.
Language:Jupyter Notebook 34Explainable AI model of cell behavior
Language:Python 19ingewortel / celltrackR
An R package for the analysis and interpretation of cell migration tracks.
Language:R 13SaadUllahAkram / CellTracker
(Biological) Cell Tracker for Microscopy Image Analysis
Language:MATLAB 13AlphonsG / EPIC-BBox-Cell-Tracking
Harness deep learning and bounding boxes to perform object detection, segmentation, tracking and more.
Language:Python 8simonguld / CellSegmentationTracker
A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy
Language:Jupyter Notebook 6cells2numbers / migrationminer
MigrationmineR is a R package to analyse and profile in vitro cell tracking and migration data. It is belongs to the cytominer-verse used for morphological profiling and allows to create temporal or dynamic profiles.
Language:R 5Microscopy image processing with TensorFlow
Language:Python 5Kafri-Lab / Cell-Tracking
Track 2D cell motion and mitosis in time-lapse microscopy
Language:Matlab 4ocbe-uio / CellMAPtracer
A user-friendly tracking system for long-term migratory and proliferating cells
Language:MATLAB 2pawelswoboda / LP_MP-Cell-tracking
Dual decomposition solvers for various cell tracking problem formulations based on the LP_MP library
Language:C++ 2c-litschko / Dicty-Tracking
Tool for semi-automatic tracking of migrating Dictyostelium cells from phase-contrast time-lapse image series
Language:Visual Basic 1hritam-98 / Cell-tracker
Official Implementation of our paper on Cell Tracker Algorithm for NPC Cell maturation profile understanding.
Language:MATLAB 1QBioLab / CountmRNA.jl
Tracking cell and count mRNA inside each cell
Language:Jupyter Notebook 1Rohit-Kundu / Cell-Tracker
Official Implementation of our paper on Cell Tracker Algorithm for NPC Cell maturation profile understanding.
Language:MATLAB 1TimScherr / KIT-GE-3-Cell-Segmentation-for-CTC
Distance-transform-prediction-based segmentation method used for our submission to the 6th edition of the ISBI Cell Tracking Challenge 2021 as team KIT-Sch-GE (2) (now KIT-GE (3)).
Language:Jupyter Notebook 1front-line-tech / cell-monitor
Cell Monitor is an app for monitoring the cell tower connections your device makes.
Language:Java 0Guyon-J / Coculture_Gliomas-Neurons
Image process framework to easily analyse fluorescent glioblastoma cells in pattern of neurons.
Language:ImageJ Macro 0nthndy / cell-comp-analysis
Analysis for cell competition phd project
Language:Jupyter Notebook 0An R package for tracking cells and analyzing their trajectories
Language:R 0SecureAIAutonomyLab / cell-state-dynamics
Deep Learning based segmentation and tracking to understand the dynamics and morphology of cells over time.
Language:Python 0tuthill-lab / Mamiya_2023
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
Language:Jupyter Notebook 0- Language:Python
jlifferth / HCC_analysis
Research project to track movement of Hepatoceullar Carcinoma cells.
Language:Jupyter Notebook- Language:TeX
LauLauThom / knimeTGMM_reloaded
Knime workflow to facilitate segmentation and tracking in 3D + time cell images using the TGMM 1.0 software by the Keller lab (https://www.janelia.org/lab/keller-lab).
Language:Python- Language:Jupyter Notebook
