Nathan J. Day's repositories
hologram_analysis
first ever git repo so be nice - analysis script (originally in matlab) designed to take a holographic microscopy time-lapse image and calculate the dry mass over time of each single cell
btrack
Bayesian multi-object tracking
CAFI
Combined Repos from DAIN and Zooming SlowMo
cell-comp-analysis
Analysis for cell competition phd project
CellComp
Python Scripts to my Cell Competition project contribution. Looking at pure WT cell populations to identify patterns of CSC.
cellx-predict
Explainable AI model of cell behavior
cnn-annotator
Annotate microscopy images for CNN classifier
ipls-workshop
Setup instructions for the IPLS workshop April 2021
octopuslite-reader
reader for octopuslite data
DAIN
Depth-Aware Video Frame Interpolation (CVPR 2019)
jSPIM
ImageJ macro for realigning multidimensional single plane illumination microscopy data
unet_segmentation_metrics
Metrics for determining segmentation accuracy