cell-lines

There are 0 repository under cell-lines topic.

bhklab / PharmacoDB
Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.
drugs cell-lines tissues drug-targets datasets experiments drug-dose-response-curves
Language:JavaScript 45
CLO-ontology / CLO
Communitiy-based Cell Line Ontology
cell-biology cell-lines obofoundry ontology owl rdf
Language:Shell 19
dibbelab / singlecell_bcatlas
Breast Cancer Single Cell Atlas
breastcancer singlecell dropseq cell-lines gf-icf
11
ZJUFanLab / CCL-cGPS
A clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research
cancer cell-lines ccle tcga nci60 cosmic tumor subtype genomics gene-expression kolmogorov-smirnov ranking-algorithm
Language:R 9
bhklab / PharmacoDB-JS
Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.
cell-lines compounds datasets drug-dose-response-curves drug-targets experiments tissue
Language:JavaScript 5
NKI-CCB / sobolev_alignment
Sobolev alignment of deep probabilistic models for comparing single cell profiles
cancer-genomics cell-lines deep-learning gene-expression kernel-machine-learning pre-clinical scanpy scrna-seq scvi-tools single-cell variational-autoencoder clinical drug-response python
Language:Python 5
pheonixchen / COSMIC-cell-lines-webcrawler
COSMIC数据库全部细胞系内容
bioinformatics cell-lines cosmic sanger
Language:Python 5
assefamaru / cellosaurus-api
Unofficial API for the Cellosaurus
cell-lines cellosaurus cellosaurus-api gin go mysql
Language:Go 4
xduan7 / UnoPytorch
Multi-tasking (drug response, cell line classification, etc.) Uno Implemented in PyTorch.
pytorch drugs cancer cell-lines
Language:Python 4
HT22_genome_epigenome_functional_genomics_project
TNTurnerLab / HT22_genome_epigenome_functional_genomics_project
arima cell-lines cells hi-c illumina pacbio rnaseq wgs
Language:HTML 3
mcmzxx / mfMap.py
This repository contains code for MFmap (model fidelity map), a semi-supervised generative model integrating gene expression, copy number and mutation data, matching cell lines to cancer subtypes. MFmap compresses high dimensional omics data of cell lines and bulk tumours into subtype informative low dimensional latent representations and predicts the subtype of cell lines with high accuracy and good generative performance. http://h2926513.stratoserver.net:3838/MFmap_shiny/
generative-model vae semi-supervised-learning cancer genomics cancer-stratification cell-lines tcga ccle high-dimensional-data cellline-tumor-matching translational-medcine cancer-subtype in-silico-perturbation drug-response
Language:Python 2
NKI-CCB / TRANSACT
Python implementation of TRANSACT, a tool to transfer non-linear predictors of drug response from model systems to tumors.
cell-lines drug-response drug-response-prediction interpretability kernel-methods python tumors principal-vectors
Language:HTML 2
BCMSLab / task_perturbation
Code for the article "Disruption of cancer cell functions by task-specific drug perturbations"
cancer cell-lines task-specialization drug-perturbation
Language:R 1
bdolmo / CeLAuth
Cell Line Authentication from ChIP-seq data
chip-seq authentication snv cell-lines rna-seq
Language:Perl 0
DSMZCellDive
JKoblitz / DSMZCellDive
cancer-research str-profiling cell-biology cell-lines
Language:CSS 0
TNTurnerLab / Revio_N2A
TNTurnerLab Code for Revio Neuro-2a paper
cell-lines cells genetics genomics methylation pacbio revio variation
Language:Shell 0
U54Bioinformatics / CAMA1_resistance
Differential expression analysis of CAMA-1 cells in the context of ribociclib resistance and facilitation.
cell-lines evolution rna-seq scrna-seq
Language:R 0

cell-lines

bhklab / PharmacoDB

CLO-ontology / CLO

dibbelab / singlecell_bcatlas

ZJUFanLab / CCL-cGPS

bhklab / PharmacoDB-JS

NKI-CCB / sobolev_alignment

pheonixchen / COSMIC-cell-lines-webcrawler

assefamaru / cellosaurus-api

xduan7 / UnoPytorch

TNTurnerLab / HT22_genome_epigenome_functional_genomics_project

mcmzxx / mfMap.py

NKI-CCB / TRANSACT

BCMSLab / task_perturbation

bdolmo / CeLAuth

JKoblitz / DSMZCellDive

TNTurnerLab / Revio_N2A

U54Bioinformatics / CAMA1_resistance