Eric van der Helm's repositories
matlab-git
A simple function that lets you use GIT from matlab using standard GIT commands
poreFUME_paper
Provides Jupyter notebooks to analyse the poreFUME output
ASMworkshop
Functional Metagenomic Selections for Antibiotic Resistance Gene Profiling at ASM Microbe '17
django-neomodel
Neomodel plugin for Django
CIIDSketch
A Processing sketch made in 2013 to visualize functional metagenomic data
daisypi
DaisyPi Home Automation project based on Raspberry Pi / envinronmental ( indoor ) data logging
deFUME
deFUME is an easy-to-use web-server for trimming, assembly and functional annotation of Sanger sequencing data derived from functional selection experiments. As input the user simply provides raw Sanger sequencing chromatograms or pre-assembled sequencing projects. Upon submission the web-server processes the information by integrating multiple analysis steps into one single workflow: read trimming, assembly of reads into contigs, open reading frame prediction, BLAST and enrichment with available metadata. As output, deFUME delivers a comprehensive sequence-overview that include functional annotations and sequence statistics.
dokku-neo4j-1
Dokku Neo4j unofficial plugin
gohugo-theme-ananke
Ananke: A theme for Hugo Sites
hclust-fasta
Blast all-against-all and Hierachical clustering of protein sequences in FASTA
nanopolish
Signal-level algorithms for MinION data
ODity-growth-E-coli
This is the full data analysis accompanying the pre-print 'Quantifying live bacterial densities using non-invasive optical measurements of E. coli' on bioRxiv.
papernetwork
Collect and analyze scientific literature from Semantic Scholar
porecamp.github.io
Jekyll Starter Theme - Minimial
PrettyPandas
A Pandas Styler class for making beautiful tables