Institut de Génomique

Ultimate-DataTable

This AngularJS directive generate a HTML table with build-in fonctionnality like save, edit, remove, pagination etc...

Gmove

Gmove is a gene prediction tool

HAPO-G

Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.

NaS

NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore technologies to produce NaS (Nanopore Synthetic-long) reads of up to 60 kb that aligned with no error to the reference genome and spanned repetitive regions.

hibernatetools-gradle-plugin

Hibernate tools plugin to reverse engineering database from gradle

BoardION

biscot

Bionano SCaffolding Correction Tool

Pahang-associated-data

This repository contains all the scripts used to produce the paper's figures

NGL

NGL is a simple and flexible LIMS for the management of NGS projects.

fastxtend

A package to perform NGS quality control

MaGuS

MaGuS (Map-Guided Scaffolding) is a map-guided scaffolder and a reference-free assembly quality evaluator.

obo-parser

A java parser for obo file format as provided by unipathway

orthodotter

Synteny plots (oxford grid)

LocoGSE

A tool to estimate the genome size

saturn

A tool for assessing the library saturation without alignment

bamFilters

A tool to filter BAM files

Kfir

TaraPacific_Pocillopora-transcriptomic

Transcriptomic plasticity and symbiont shift underpin Pocillopora acclimatization across heat-stress regimes in the Pacific Ocean

bio-scribe

Performs basics operation from various file format

Corals-associated-data

fuzzy-lca-module

Module dedicated to LCA algorithms and taxonomy management

galop

GALOP - Genome Assembly using Long reads Pipeline

Microcyc-model

NCLIM-20102618B

NGL-Dependencies

NGL-documentation

ReadUntil

Renan-associated-data

taskmanager

TaskManager allows to develop generic workflows in Perl, potentially executable in various environments and with different degrees of parallelization. TaskManager can ex-ecute from two to thousands tasks in parallel, depending on the available resources, using "batch manager" as Slurm or Lsf

tetracker

TE-Tracker, a program dedicated to the de-novo discovery of transposition events.