Hufford Lab

NAM-genomes

Detailed bioinformatics scripts and methods used in the NAM genome paper.

GenomeQC

Wang_et_al._Demography

Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"

Maize_NC358

The repository for codes developed to generated the Maize NC358 assemblies and analyses.

Maize_WGS_Build

Code and Data to include in WGS Build

NSF_DEB

Full Proposal: The Evolutionary Role of Hybridization and Introgression in the Genus Zea

streptochaeta

methods for the Streptochaeta genome paper

Gene_Annotation_Pipeline

Gene Annotation Pipeline

HuffordLab.github.io

Hufford Lab Website

panand_genome_evolution

repository for panand genome evolution paper

ZeaGeneFlow_SNPChip

B104

B104 assembly and atlas project

Biol462

Course Repository for Biology 462: Evolutionary Genetics

Convergence_Domestication

Review on the extent of convergence during domestication of cereals

Crop_Adaptation_Gene_Flow

Hufnagel_et_al._Teosinte_Hybrid_Zones

repository for analysis pipeline and scripts for Hufnagel et al. 2021

Hufnagel_NSF_GRFP

Inbreeding_Depression

Juicer_PanAnd

modified scripts for Juicer to run effeceintly

MaizeGDB_gff3_format

script to convert GFF3 files to maizeGDB specifications

Shawn_Goggins