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WestGermanGenomeCenter / BNG_nanotatoR

A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data

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annotationbionanogenome-analysisopticalrsmapstructural-variation

a snakemake workflow for annotation of SVs from Bionano data

need to install:

  • R
    • R-nanotatoR(made through conda)
  • Perl

For now only fors on Linux

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A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data

annotationbionanogenome-analysisopticalrsmapstructural-variation

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Language:R 62.8%Language:Perl 30.8%Language:Python 6.4%