Jordan Lab

jordanlab

The Jordan Lab @ Georgia Tech | Bioinformatics and Computational Genomics

Georgia Institute of Technology

http://jordan.biology.gatech.edu/

Jordan Lab's repositories

stringMLST

Fast k-mer based tool for multi locus sequence typing (MLST)

Language:PythonNOASSERTION42 8 46

tagore

The script presents a simple way to visualize features on human chromosome ideograms

Language:PythonGPL-3.036 6 7

STing

Ultrafast sequence typing and gene detection from NGS raw reads

Language:C++NOASSERTION19 4 15

stringMLST_datasets

stringMLST datasets

MIT5 3 5

GADGET_explore

Source code for the GADGET explore module: https://gadget.biosci.gatech.edu/explore/

Language:RGPL-3.02 30

pChunk

Rapid, accurate annotations of Plasmids from Illumina NGS reads

Language:RNOASSERTION1 20

STing_datasets

MLST and other databases for STing

Language:PythonMIT1 30

ChocoGen-TraitMap

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ChocoGen3-Chandeetal-2020

Scripts for Chande et al. 2020. The phenotypic and functional consequences of genomic divergence between admixed Latin American populations: Antioquia and Chocó, Colombia

Language:RBSD-3-Clause030

GADGET_compute

Source code for the GADGET compute module: https://gadget.biosci.gatech.edu/compute/

Language:CSSGPL-3.0030

nifH_extract

nifH_extract is a pipeline that retrieves a preliminary database of sequences from using an existing database of nifH genes.

Language:Python01 4

pfgeBLAST

PFGE from raw reads

Language:Python030

vibriocholera.com

Language:ClarionMIT020