Carl's repositories
Metabolite-Investigator
Shiny-Tool for investigation of metabolite-covariate relationships
imise_gxmetab
Scripts used for an association study of human blood metabolites and gene expression measurements
cacomistle-contamination-extract
Scripts and a SLURM job to extract NGS reads mapping to multiple known sequences
CarlHelpR
CarlHelpR: Convenience Functions and GitHub test for package creation
gwascatftp
R package to access GWAS Catalog FTP data
HT12ProcessoR
Preprocessing ILLUMINA HT12v4 data intended for project up to thousands of samples
imise_cap_severity_scores
Archive of a Shiny for computation of a variety of CAP scores
imise_functions
An unordered collection of functions I've used for my work at the IMISE. This is mostly an archive and probably useless to anyone but me.
interactivefigure4
Interactive shiny-app of a figure used in a publication
mediation-net
Archive/Mirror of a shiny-app that is hosted in a private GitLab.
ZeroInflatedDataSim
Small simulation to help thinking about how to deal with a problematic data distribution problem
MungeSumstats
Rapid standardisation and quality control of GWAS or QTL summary statistics