The Australian e-Health Research Centre

VariantSpark

machine learning for genomic variants

pathling

Tools that make it easier to use FHIR® and clinical terminology within data analytics, built on Apache Spark.

cvt2distilgpt2

Improving Chest X-Ray Report Generation by Leveraging Warm-Starting

smart-forms

React-based form renderer implementing Structured Data Capture (SDC) FHIR specification

ontoserver-deploy

Sample deployment project for Ontoserver

fhir-claml

Transforms ClaML classifications into FHIR code systems.

cxrmate

CXRMate: Longitudinal Data and a Semantic Similarity Reward for Chest X-Ray Report Generation

redcap_fhir_ontology_provider

REDCap external module provides support for referencing an external Fhir based ontology server to lookup values.

PEPS

Polygenic EpiStatic Phenotype Simulation

isling

A tool for detection of viral integrations

smart-forms-ig

fhir-tx-transforms

Transformations of various code systems to FHIR.

jre-docker

Docker images for building base images capable of running Java applications.

sVEP

OCT_Denoising_pix2pix

Employing Texture Loss to Denoise OCT Images using Generative Adversarial Networks

org.hl7.fhir.core

release-validation-framework

API for testing a SNOMED CT release as part of the release process.

snap2snomed

Development version of Snap2Snomed. Please raise issues here: https://github.com/IHTSDO/snap2snomed

snapagogo

A fork of snap2snomed with a scope expanded beyond just mapping to SNOMED CT, hence the renaming

amt-flat-file-generator

A demonstration command line tool wrapping a Java library that generates a “flat” form of AMT.

genomator

Privacy-hardened, hallucination-resistant synthetic data generator.

hapi-fhir

HAPI FHIR - Java API for HL7 FHIR Clients and Servers

logical-model-web

PathsBeacon

Efficient exchange platform for pathogen genomes and meta-data information adhering to international standards using the sBeacon framework.

RAPpoet

RAP paralelization orchestration engine template: Optimised driver and worker scripts for genomic analyses on UKBB cloud-based, Research Analysis Platform (RAP)

sctau-sample-scripts

Sample relational database load scripts and SQL queries for processing SNOMED CT-AU RF2 release files.

sianno-xray

SMART-EHR-Launcher

snowstorm

Scalable SNOMED CT Terminology Server using Elasticsearch

sql-on-fhir-v2

This project provides the source for the SQL on FHIR v2.0 Implementation Guide