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backup for https://www.bioconductor.org/packages/3.12/bioc/html/simpleaffy.html
This scripts involves five major steps including GEO dataset download, data normalization, data manipulation, fetching phenodata and feature data and differentially expressed genes (DEGs) analysis using R and bioconductor packages.
read Affymetrix .CEL files
The fruits of my labor to get OpenBLAS to work with R and fix the p_thread22() error in affy::rma()