xindong95

Xin Dong's repositories

SCRIP

SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-cell resolution based on scATAC-seq.

Language:PythonMIT3 1 4

FilterWorkFlow

Language:Python100

mdseqpos

Language:Python1 1 2

SCRIP_notebook

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xindong95.github.io

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CHIPS

A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data

Language:PythonMIT000

chromVAR

chromatin Variability Across Regions (of the genome!)

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DEAP

Differential Expression Analysis Pipeline

Language:PythonGPL-3.0000

GEOParser

Language:Python010

MACS

MACS -- Model-based Analysis of ChIP-Seq

Language:PythonBSD-3-Clause000

MicroarrayPipeline

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pyRNAseq

A python RNAseq analysis pipeline

Language:PythonMIT010

singleCell_gse_parser

Language:Python000