Merly Escalona's repositories
ucsc-eeb-intro2comptools
Workshop/seminar on basic programming skills for biologists / Introduction to computational tools
indelible-ngsphy
This is a fork of the original INDELible (Fletcher and Yang, 2009), a simulator of biological evolution. Now allowing the use of a sequence as ancestral.
eseidojo-opencv-python
This is basic code to read, create and handle images and videos with Pyhton and OpenCV.
me-bioinf-utilities
Random scripts to solve small bioinformatic-related problems
cph-hummers-coverage-analysis
Coverage analysis of the data from the targeted-sequencing experiment of Hummingbirds (data from the paper Fonseca et al. 2018)
datasciencecoursera
Data Science Toolbox github repository
datasharing
The Leek group guide to data sharing
ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
mapping_pipeline
Mapping pipeline for data generated using Arima-HiC
molluscs-paving
Simulations for the discovery of PAV
Mutation-Simulator
Mutation-Simulator is a tool designed to simulate mutations on given fasta files and creating an according vcf or csv file, which contains all information about the mutations.
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
refselector
For simulations of targeted-sequencing experiments under a known species/gene tree distribution, extracts the reference sequences that be used for mapping.
RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
simphycompress
Compresses SimPhy datasets into a single gzipped file for all the gene trees and gzipped mulitple sequence alignments for all the loci.
travis-ci-tests
Trying to omit constantly modifying the source repo to fix installation issues
vc-benchmark-cesga
Variant callers benchmark using in silico targeted-sequencing datasets with pipeline optimized for SLURM @ CESGA, ES.