allele-specific-expression

There are 2 repositories under allele-specific-expression topic.

• p4rkerw / Muto_Wilson_NComm_2020

  Workflow for analysis of healthy human kidney by snRNAseq and snATACseq

  allele-specific-expressionbioinformaticsgenomicskidneysingle-cellsingle-cell-atac-seqsingle-cell-rna-seq
  Language:R 23

• aryarm / as_analysis

  A complete Snakemake pipeline for detecting allele specific expression in RNA-seq

  allele-specific-expressionatac-seqrna-seqsnakemakewhole-genome-sequencing
  Language:R 9

• churchill-lab / emase-zero

  C++ Implementation of EMASE

  allele-specificexpressionexpectation-maximization-algorithmallele-specific-expression
  Language:C++ 6

• gimelbrantlab / ASE

  early version of (Pipeline for detection of differential allelic imbalance from RNA-seq)

  allele-specificallele-specific-expressionrna-seq
  Language:HTML 6

• Arkosen / Allele-imbalance-analysis-of-RNA-and-DNA

  Allele-specific analysis of RNA-seq and DNA-seq data

  allele-specific-expressionnon-coding-rnagene-expressioncancer-genomics
  Language:R 3

• dyohanne / HLAXPress

  HLAXPress performs estimation of allele-specific expression levels for HLA genes using UMIs.

  allele-specific-expressionhlahla-typing
  Language:R 3

• sbresnahan / Galbraith-2016-PNAS-ASE-replication

  Replicating the bioinformatics and statistics pipelines for allele-specific expression analysis of ovary tissue from sterile and reproductive reciprocally crossed honey bees as described in Galbraith et al. (2016). PNAS. https://www.pnas.org/content/113/4/1020

  allele-specific-expressionhoney-beeovarybioinformaticsstatisticsreplication
  Language:HTML 2

• aryarm / str_ase

  Allele-specific expression (ASE) for short tandem repeats (STRs)

  allele-specific-expressionlinear-regressionshort-tandem-repeatssnakemake
  Language:Python 1

• bcgsc / IMPALA

  Integrated Mapping and Profiling of Allelically-expressed Loci with Annotations

  allele-specific-expressionbioinformaticscancersnakemake-workflow
  Language:R 1

• Federico77z / aScan

  aScan is a software tool for the determination of allele-specific-expression at the single individual level from matched RNA-Seq and genomic data.

  ascanbioinformaticsallele-specific-expression
  Language:C++ 1

• sbresnahan / IGC-retinue

  Beyond conflict: intragenomic conflict predicts individual variation in altruistic behaviour.

  allele-specific-expressionbehaviorbioinformaticsgene-network-inferencehoneybeemachine-learningtranscriptomics
  Language:HTML

• shiquan / Yano

  Spatial dissimilarity analysis in single cells

  allele-specific-expressionalternative-splicingcisantisense-rnaexpressed-peak-tagexpressed-sequence-tagsingle-cellspatial-transcriptomics
  Language:C