Machine Learning for Genomics's repositories
EUGENe_paper
Code for generating the figures and results presented in the manuscript EUGENe: A Python toolkit for sequence activity prediction and analysis
SeqExplainer
Interpreting sequence-to-function machine learning models
awesome-dl4g
(Soon to be) community-curated list of software packages and data resources for deep learning for genomics (DL4G)
SeqDatasets
Datasets for benchmarking, testing and developing in EUGENe
MotifData
Motif representation and analysis toolkit in Python
UCSD_DL4B
The official GitHub repository of UCSD's DL4B working group
AI-ATAC
Dataset from the AI-TAC convoluional network for predicting mouse immune cell ATAC-seq signal
deAlmeida_DrosophilaS2_UMI-STARR-seq
UMI-STARR-seq in Drosophila Melongaster, both genome wide and oligo based
deBoer_random-promoters_GPRA
Quantified activity of millions of random yeast promoters with GPRAs
external
Code snippets and wrappers for use of external tools without forking repos
Horlacher_HepG2_CLIP
Predicting protein-RNA interaction via sequence-to-signal learning from CLIP-seq data
K562_ATAC-seq
ENCODE K562_ATAC-seq dataset
RNACompete2013
The 2013-RNAcompete dataset consists of 244 experiments for 207 RBPs using only weakly structured probes