Hannes Stärk's repositories
protein-localization
Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of proteins :microscope:
gnn-reinforcement-learning
Representing robots as graphs for reinforcement-learning in PyBullet locomotion environments.
hannes-stark
Code for my website built with Angular and running on GitHub Pages.
attention-to-binding-sites
Unsupervised method for binding site prediction using attention patterns of protein language models.
audioImprovement
Removing background noise from clips of speech and improving audio quality (PyTorch)
molecule-ELECTRA
Pre-train and evaluate Graph Neural Networks or Transformers on molecules with the ELECTRA method.
bachelorThesis
TensorFlow code and LaTex for Bachelor Thesis: Understanding Variational Autoencoders' Latent Representations of Remote Sensing Images :earth_africa:
dependencyNodeRanking
R code for NetworkCentralityCalculator. A web-tool with 5 different centrality measures. LaTex and pdf for documentation and explanation of different measures with a focus on "dependency centrality".
ec-number-prediction
Using similarity in embedding space for predicting EC numbers
se3-transformer-public
code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503
bio_embeddings
Get protein embeddings from protein sequences
DIG
A library for graph deep learning research