Miguel de Navascués's repositories
ABCRFtutorial
Crash Course on Approximate Bayesian Computation in Population Genetics
DIYABCskylineplot
DIYABCskylineplot: A suite of R scripts to perform a Approximate Bayesian Computation Skyline Plot
ABC_TimeAdapt
TimeAdapt makes a joint inference of demography and selection from longitudinal population genomic data. The inference is based on approximate Bayesian computation via random forest. It takes whole genome data and information about the ages of samples to perform simulations (using SLiM + pyslim/msprime).
ABCQuinoa
Scripts in R for an an approximate Bayesian computation analysis of ancient Quinoa gene pools and their contribution to modern varieties in Antofagasta
Blue-Caterpillar
Programme to perform individual population assignment based on linked microsatellite data
drifttest-Evaluation
Evaluation of the detection of locus under selection with temporal Fst outliers with the program drifttest
microsatABC-IM
A script in R to perform an Random Forest Approximate Bayesian Computation analysis under the Isolation with Migration model from microsatellite data
manuscript-Tracking-selection
manuscript material for the Tracking-selection paper
mnavascues
Config files for my GitHub profile.
SIplusA
Population genetics forward simulation with self-incompatibility system and partial asexuality
SLiM
SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.
Tracking-selection
Pipeline to simulate, calculate and prepare the reference table for ABC-RF analysis.