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sgkit-dev's repositories

Scalable genetics toolkit

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Convert bioinformatics file formats to Zarr

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Partial reimplementation of bcftools for VCF Zarr

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VCF Zarr Specification

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Repo for collecting requirements.

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Sgkit publication repository

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Manuscript and associated scripts for vcf-zarr publication

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Hypothesis strategy for generating VCF

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Default community health files

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SAIGE extension that supports VCF Zarr

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NOW ARCHIVED! BGEN IO implementations for sgkit. With https://github.com/pystatgen/sgkit/issues/65, now maintained and developed in the sgkit repo.

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NOW ARCHIVED! PLINK IO implementations for sgkit. With https://github.com/pystatgen/sgkit/issues/65, now maintained and developed in the sgkit repo.

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Backup of sgkit publication repository, original manubot version

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NOW ARCHIVED! VCF IO implementations for sgkit. With https://github.com/pystatgen/sgkit/issues/65, now maintained and developed in the sgkit repo.

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