peak-calling

There are 0 repository under peak-calling topic.

nf-core / chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
nf-core nextflow workflow chip-seq chromatin-immunoprecipitation peak-calling chip pipeline macs2
Language:Nextflow 173
nf-core / clipseq
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
workflow pipeline nextflow clip nf-core peak-calling clip-seq rna-rbp-interactions
Language:Nextflow 16
odb9402 / CNNPeaks
The ChIP-Seq peak calling algorithm using convolution neural networks
cnn-model nvidia-docker tensorflow bioinformatics chip-seq peak-calling convolutional-neural-network gpu docker-image progressbar2 samtools ngs-analysis atac-seq
Language:Python 13
HuntsmanCancerInstitute / MultiRepMacsChIPSeq
Multiple-replica multiple-condition Macs2 ChIPSeq wrapper
atac-seq chip-seq chromatin macs2 peak-calling
Language:Perl 7
nanxstats / oneclust
🥇 Maximum homogeneity clustering for one-dimensional data
clustering-algorithm homogeneity feature-engineering peak-calling univariate-data
Language:R 5
RenneLab / CnR-flow
CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.
nextflow cutandrun-seq genomics peak-calling cutandrun chip-seq-pipelines cutrun
Language:Nextflow 5
skchronicles / PeakCalling
Benchmarking ChIP-seq peak callers
chip-seq peak-calling broad-peaks narrow-peaks music macs2 peak-analysis sicer dfilter pepr gem
Language:Python 5
JetBrains-Research / chipseq-smk-pipeline
ChIP-Seq processing pipeline on snakemake
atac-seq chip-seq peak-calling pipeline quality-control snakemake visualization
Language:Python 3
OpenOmics / cfChIP-seek
cell-free ChIP-seq pipeline
cell-free-dna chip-seq peak-annotation peak-calling quality-control snakemake cell-type-deconvolution
Language:Python 3
OpenOmics / chrom-seek
An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
annotation atac-seq bulk cell-free-dna chip-seq differential-accessibility differential-binding peak-calling quality-control
Language:Python 3
deeprob / biopeaker
Peak classification with Deep Learning
deep-learning motif-prediction peak-calling sequence-annotation
Language:Python 1
dansta0804 / TF_analysis
Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.
homo-sapiens chip-seq mus-musculus r transcription-factor-binding genomic-regions peak-calling shinydashboard genome-annotation pwm
Language:R 0
JetBrains-Research / washu
Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing
chip-seq pipeline parallel-computing qsub bash qc visualization peak-calling rna-seq analysis
Language:Shell 0
petrokvitka / Footprints_extraction
A small script to find peaks from the .bigWig file and output them in a .bed file.
bigwig signal peak-calling peak-detection footprint
Language:Python 0
stjude-biohackathon / peakPeekeR
Peak calling optimization via real time results assessment and interactive parameter adjustment.
atac-seq chip-seq cutandrun cutandtag genrich macs macs2 peak-calling shiny peak-callers sicer2
Language:R 0
alnfedorov / visual-peaks-AP
chip-seq peak-calling
Language:Python
AntoinePassemiers / ChIP-seq-Peak-Caller
Peak Calling algorithm for Chromatin-immunoprecipitation sequencing (ChIP-seq) data
chip-seq peak-calling
Language:Python
meekrob / spp
SPP - R package for analysis of ChIP-seq and other functional sequencing data
hpc peak-calling chip-seq onishlab
Language:C++
neurogenomics / PeakyFinders
R package for mining, calling, and importing epigenomic peaks.
encode epigenomics gene-expression-omnibus genomics peak-calling r r-package
Language:R

peak-calling

nf-core / chipseq

nf-core / clipseq

odb9402 / CNNPeaks

HuntsmanCancerInstitute / MultiRepMacsChIPSeq

nanxstats / oneclust

RenneLab / CnR-flow

skchronicles / PeakCalling

JetBrains-Research / chipseq-smk-pipeline

OpenOmics / cfChIP-seek

OpenOmics / chrom-seek

deeprob / biopeaker

dansta0804 / TF_analysis

JetBrains-Research / washu

petrokvitka / Footprints_extraction

stjude-biohackathon / peakPeekeR

alnfedorov / visual-peaks-AP

AntoinePassemiers / ChIP-seq-Peak-Caller

meekrob / spp

neurogenomics / PeakyFinders