cutandrun-seq

There are 0 repository under cutandrun-seq topic.

nf-core / cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
nf-core nextflow workflow pipeline cutandrun-seq cutandrun cutandtag-seq cutandtag
Language:Nextflow 66
RenneLab / CnR-flow
CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.
nextflow cutandrun-seq genomics peak-calling cutandrun chip-seq-pipelines cutrun
Language:Nextflow 5
mgildea87 / CUT-RUN
Paired-end CUT and RUN data processing workflow designed for execution on the BigPurple HPC. Primary software used: FastQC, Fastp, Bowtie 2, SEACR, MultiQC
workflow cutandrun-seq
Language:Python 2
sirusb / HMMDomainCaller
An HMM-based domain caller from bw
bigwig chip-seq cutandrun-seq epigenetics hmm ngs
Language:R 2
Hattyoriiiiiii / ngs-scripts
ngs ngs-analysis rna-seq atac-seq chip-seq cutandrun-seq cutandtag-seq docker super-enhancer rose
Language:Shell 1
chaochaowong / domainCalling
Tools to call large binding domains from CutAndRun-seq or to identify long non-coding RNA transcripts from RNA-seq
csaw visualization cutandrun-seq
Language:R 0

nf-core / cutandrun