virus-classification

There are 1 repository under virus-classification topic.

• bioinfoUQAM / CASTOR_KRFE

  Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences

  rfetaxonomic-classificationvirus-classificationkmersalignment-freecastorfeature-extractionmachine-learningcastor-krfesvmsvm-rfe
  Language:Python 9

• DMnBI / ViBE

  ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data

  transformersbertembeddingvirus-classificationmetagenomevirome
  Language:Python 7

• dcarrillox / CrassUS

  A snakemake pipeline for identifying crAss-like bacteriophages in metagenomes

  virus-identificationvirus-classification
  Language:Python 4

• zamirmehdi / Bioinformatics-Course

  dynamic-programminghidden-markov-modelmultiple-sequence-alignmentprofilesequence-alignmentstar-alignmentvirus-classification
  Language:Jupyter Notebook 4

• strumenti-formali-per-la-bioinformatica / Caos-virus-taxonomy-classification

  [a.a. 23/24] A.Ture, G.Pagano

  fcgroverlap-graphtaxonomytaxonomy-classificationvirus-classificationdebrujin-graph
  Language:Python 3

• maremita / slm_kgenomvir

  Evaluation of Statistical Linear Models for Genome Virus Classification

  bayesianmachine-learningmarkov-chain-modeltaxonomic-classificationvirus-classificationstatistical-linear-modelskmers
  Language:Jupyter Notebook 1

• maremita / CASTOR_KRFE_v1.0

  [Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE

  alignment-freekmersrfetaxonomic-classificationvirus-classificationkmer-extractioncastorsvmsvm-rfecastor-krfe
  Language:Python 0