DBHi

prometheus-sql

Service that exposes Prometheus metrics for a SQL result set.

sql-agent

HTTP interface for executing ad-hoc SQL queries.

dataexpress

[NOT MAINTAINED] DataExpress is a simple, Scala-based cross database ETL toolkit supporting Postgres, MySql, Oracle, SQLServer, and Sqlite

dicom-anon

Python DICOM Anonymizer

avocado

Metadata APIs for Django

twitter-adr-blstm

A model for finding mentions of adverse drug reactions in Twitter posts

data-models

Collection of various biomedical data models in parseable formats.

diff-table

modeltree

Django model relation tree traversal, i.e. automatic joins.

sql-importer

Import CSV files into Postgres with automatic column typing and table creation.

sepsis_01

data-models-sqlalchemy

SQLAlchemy models and DDL and ERD generation from chop-dbhi/data-models style JSON endpoints.

vscode-multiline-string-editor

Edit multiline strings that need to be encoded as single-line strings (for example, JSON strings that contain literal `\n` characters) in Visual Studio Code.

aliases

A service for generating random external-facing aliases to internal identifiers.

ehb-datasources

datasource drivers, e.g. REDCap and Nautilus, that can be plugged into the Biorepository Portal

sql-extractor

data-models-validator

Set of tools for validating data that should conform to a data model.

ehb-service

masino-lab-obesity-incidence

Obesity incidence research output under PBD project

python-social-auth

2016-deprecated, but Django v1.5 compatible, PSA from omab as: Social auth made simple

brpv2

ehb-client

eig_project_template

This is a template for README markdown file on every eig projects and code repos and relate them to public DBHi projects (can be used here or in enterprise github)

GGIR

Code corresponding to R package GGIR

icebrrrg

igv-webapp

IGV Web App (forked for arcus purposes)

infomodels

One CLI to rule them all.

MIST

A package to support the Modified Interval Set Tree

social-app-django

Python Social Auth - Application - Django

strac