pubmed-abstracts

There are 0 repository under pubmed-abstracts topic.

• ncbi-nlp / bluebert

  BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

  bertbert-modelnatural-language-processingpubmedpubmed-abstractslanguage-modelmimic-iii
  Language:Python 538

• Tian312 / PICO_Parser

  A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework

  natural-language-processingpubmed-parserpicolstm-crfpubmed-abstractspico-elementrct-abstractspico-frameworkbluebertpico-parserbertevidence-based-medicineinformation-extractiontensorflow
  Language:Python 44
• ckblib

  dermatologist / ckblib

  Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J

  ctakeshacktoberfestknowledge-graphneo4jpubmed-abstractspubmed-parser
  Language:Java 14

• SannapaneniBharadwaj / PUBMED_Text_Analysis

  Analyzed PubMed Text abstracts using NLP and Topic Modeling techniques

  text-analysispubmed-abstractstopic-modeling
  Language:Jupyter Notebook 6

• cakmakaf / fetch_PubMed_abstracts_by_keyword

  It provides a method of how to fetch articles along with their features and text from PubMed API.

  biopythoncysticfibrosisentrezegqueryfetch-apimedline-parsepubmed-abstractspubmed-keywordspubmed-parserpubmed-records
  Language:Jupyter Notebook 4

• ANDDigest / ANDDigest_classification_models

  Notebooks for fine-tuning and running of PubMedBERT-based classification models, used in the ANDDigest tool

  bert-fine-tuningnerpubmed-abstractsanddigestandsystemshort-names-classification
  Language:Jupyter Notebook 3

• boudinfl / CLIREC

  CLinical Information Retrieval Evaluation Collection

  information-retrievalmedical-datasetnatural-language-processingnlppubmed-abstractstest-collection
  Language:Jupyter Notebook 2

• psaegert / pmtrendviz

  Unsupervised Discovery Of Trends In Biomedical Research Based On The PubMed Baseline Repository

  biomedical-text-miningclusteringdata-sciencedocument-representationpubmedpubmed-abstractstext-analysistrends
  Language:Python 2

• PubData2XL / PubData2XL

  Is a Django Python web application to download PubMed data into a Microsoft Excel spreadsheet and XML files.

  djangojavascriptpubmedpubmed-abstractspubmed-articles-grabberpubmed-parserpubmed-xmlpythonexcelxlsxxlsxwriter
  Language:HTML 2

• shubhpawar / Document-Clustering

  Clustering PubMed Abstracts using K-Means Algorithm

  k-means-clusteringclusteringunsupervised-learningmachine-learningpubmed-abstracts
  Language:Jupyter Notebook 2

• biomedicalinformaticsgroup / pm_abs_extr

  This repository automatically requests and extracts abstract from PubMed.

  bionlppubmed-abstractsbiomedical-text-miningpythontext-mining
  Language:Python 1

• etetteh / bio-electra

  BioMedical Language Processing with ELECTRA

  chronic-diseasescord19covid-19electra-modelnlpbiomedical-languagebookcorpusfinetuningnamed-entity-recognitionnatural-language-processingpretrained-language-modelpubmed-abstractsrelation-extractionwikipedia
  Language:Python 1

• gauravcodepro / langchain-candida-literature-miner

  This prepares the candida literature for the machine learning. Although prepared for candida, it can be used for any specific term that you want to search in pubmed

  fungal-genomesfungalgenomicsmachinelearningnatural-language-generationnatural-language-processingpubmedpubmed-abstractspubmed-records
  Language:Python 1

• gauravcodepro / tair-pubmed-connector

  There is no function to fetch automatically the information on the reported pubmed articles links in the tair to be used for the language models, so i coded this function which will take the tair information, a gene or locus tag and will fetch the corresponding pubmed and then from the pubmed the corresponding abstracts

  bioinformaticsbioinformatics-analysisbioinformatics-toolgenome-annotationlanguage-modelpubmedpubmed-abstractspubmed-articles-grabberpubmed-recordstair3
  Language:Python 1

• harshd23 / Paper_Peek

  Paper Peek is a project based on Natural Language Processing which helps the medical professional to read abstracts from the Randomized controlled trials (RCTs) abstracts into sub sections such as Background, Objective etc.

  character-embeddingsnatural-language-understandingpubmedpubmed-abstractstensorflowtokenizationword-embeddingsnatural-language-processing
  Language:Jupyter Notebook 1

• russell-stewart / pubMedTextMiner

  Text miner for PubMed abstracts

  named-entitiespubmed-abstractstext-mining
  Language:Python 1
• curehunter-data-transform

  areyasouka / curehunter-data-transform

  CureHunter XSL transformer for multithreaded conversion/transformation of a directory of XML files.

  pubmedpubmed-abstractsxmlxslcurehunter
  Language:Java 0

• gbnegrini / pmdatax

  A command-line tool to fetch and save data from articles available on PubMed using pubmed-lookup

  pubmedpubmed-abstractsdata-miningtext-mining
  Language:Python 0

• ramongsilva / Information-extraction-from-pubmed-abstracts-sentences-on-polyphenols-anticancer-activity

  This repository contains files and information about step 2 of Kaphta Architecture: Information Extraction, using the R language.

  information-extractionmachine-learningnamed-entity-recognitionassociation-recognitiontext-miningtext-classificationrule-basedpubmed-abstractsnersentences-recognizedentities
  Language:R 0