literature-mining
There are 9 repositories under literature-mining topic.
- obsidian-reference-map
anoopkcn / obsidian-reference-map
Reference and citation map for literature review and discovery
Language:TypeScript 213 lisc-tools / lisc
Literature Scanner: Automated collection & analyses of the scientific literature.
Language:Python 104krassowski / easy-entrez
Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
Language:Python 76- Language:Jupyter Notebook 38
- ScrapPaper
rafsanlab / ScrapPaper
A web scrapping method to extract journal information from PubMed and Google Scholar using Python.
Language:Python 35 Sathish-Vasudev / Article-Scraper
The program can be used to scrape the content from an article from web by an input of a set of URLs in a text file or a URL. This project uses newspaper3k and python-docx libraries. The output of this program will give a neatly modified Word Document in '.docx' format with the contents of the article.
Language:Python 16jakelever / knowledgediscovery
Analysis code for knowledge discovery project
Language:Python 12karen-pal / borges
Datasets de los textos de cuentos de varios autorxs latinoamericanxs. Datasets benchmarks de distintas librerías de sentiment analysis en español sobre un corpus de borges.
Language:Jupyter Notebook 11Yasin-VU / simple-python-bibliometrics
Easiest way to get your bibliometrics data ready and prepared
Language:Python 10BlueBrain / nat
Python module to use the annotations created with NeuroCurator, for example in a Jupyter notebook.
Language:Jupyter Notebook 8- Antibody-Watch
SciCrunch / Antibody-Watch
Antibody Watch: Text Mining Antibody Specificity from the Literature
Language:Jupyter Notebook 7 - Language:Python 7
ac-jorellanaf / Google-Scholar-Scraper
A wrapper for the scholarly library to scrape Google Scholar entries through a keyword search, and add suggested DOIs using CrossRef with habanero.
Language:Python 6- Language:Python 6
flppgg / maltego_academia
Set of Transforms for exploring the academic literature
Language:Python 6MarissaSkud / Wordsworth
A web app (wordsworth.us) to identify anachronistic words & phrases in historical fiction by comparing it to fiction written during that era. Hackbright Fellowship final project.
Language:HTML 6Science-for-Nature-and-People / BibScan
R package to batch download PDFs from a Web of Science search
Language:TeX 6stephenjwilson / MeTeOR
MeTeOR, or the MeSH Term Objective Reasoning network, is a network representation of genes, drugs, and diseases built on MeSH terms curated by the National Library of Medicine
Language:MATLAB 6dujm / Literature_mining_PubMed
An app for myself to search PubMed literature
Language:R 4hhassanien / CRISP-DM-for-Augmented-Relevant-Literature-Search
CRISP-DM for Augmented Relevant Literature Search
- algoritmos-pessoa
InterruptorPt / algoritmos-pessoa
Consegue um algoritmo distinguir os vários heterónimos de Pessoa? Uma viagem por processamento de linguagem natural.
Language:Jupyter Notebook 4 gaospecial / gut-microbiome-20yrs
Gut microbiome study (from 2000 to 2020)
Language:HTML 3shaunabanana / chi-11-years
Analyzing 11 years of CHI conference papers (2011-2021) with machine learning.
Language:TeX 3amberbiology / scribl
Semantic Capture of Relationships In Biological Literature (scribl)
Language:Python 2baharsateli / Dissertation_Supplementary_Materials
Datasets, tools and results from my doctoral dissertation
Language:Shell 2HarnoorDhingra / Swanson-s-Model-for-Biomedical-Discoveries
Using NLP techniques, finding new relations and discoveries in Biomedical Literature(Vitiligo disease literature).
Language:R 2- Language:Python 2
- Language:Go 1
I3ALAQV / Literature_mining_of_contaminants_in_food_groups
Literature mining of 96 contaminants in 72 foods using FoodMine This work is part of DIETxPOSOME project of FOODinteract Research Team
Language:Jupyter Notebook 1- Language:Java 1
JDGiacomantonio-98 / TA-FractureLab-ArchiveCatalog
This repo encapsulate a simple python procedure used for handling repetitive tasks during my Part-time Teaching Collaboration at Politecnico di Torino, winter 2020. I performed an indexing task of all gathered literature' paper material by Prof. A. Carpinteri during his carrer and now made available to students of Civil Engineering currently working on material fracture mechanics. The procedure allows compatibility of an Excel data-sheet, where data were manually stored, with the requested and all-precisely-formatted-as-requested Word document. In turn, this shall work as the index catalog of contents of the Laboratory of Fracture library here at Politecnico.
Language:Python 1- Language:Jupyter Notebook 1
PREreview / getpreprints
Preprint metadata harvesting
Language:JavaScript 1rvdb7345 / ArticleClassifier
Literature indexing using Graph Neural Networks and label-guided text embeddings.
Language:Jupyter Notebook 1sciencegenome / langchain-application
a langchain literature miner from pubmed
Language:Python 1seandstewart / iambic
Text processing, data extraction, and rendering library for Shakespearean text.
Language:Python 1
