There are 3 repositories under pubmed-central topic.
:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
Open Access PDF harvester
A tool for harvesting media files from Open Access articles for upload into Wikimedia Commons
The aim of this project is to use the text from biomedical and life science literature to gain insights on research topic trends over time.
MediaWiki bot to upload content to Wikimedia projects and update corresponding citations on Wikipedia.
Repository of our paper on Self-citation analysis in PubMed data
Batch downloads full-text PDFs (or any other soruces) from PubmedCentral OA articles
Citation.js plugin to output QuickStatements
ScrapeMed: Data scraping for PubMed Central.
A pipeline for inferring gender for acknowledged individuals in scientific literature on a massive scale
A library that facilitates the process of building a machine learning pipeline using PubMed as a data source
Extract figures and figure captions from PMC open access papers
This is an upgraded version of the original snorkeling project.
This script reads the exported (.csv|.txt) files from Scopus, Web of Science, PubMed, PubMed Central, Dimensions or Google Scholar exported from Publish or Perish databases and turns each of them into a new file with an unique format. This script will ignore duplicated records.
Citation.js plugin for PubMed and PubMed Central identifiers
PubMed Central browser
observations about ethical aspects of publications available via PubMed Central
This script reads the exported (.csv|.txt) files from Scopus, Web of Science, PubMed, PubMed Central, Dimensions or Google Scholar exported from Publish or Perish databases and turns each of them into a new file with an unique format. This script will ignore duplicated records.
This script eliminates the duplicated records from formatted .xlsx files from Scopus, Web of Science, PubMed, PubMed Central, Dimensions or Google Scholar exported from Publish or Perish. Is mandatory that there be at least 2 different files from 2 different databases.
This script eliminates the duplicated records from formatted .xlsx files from Scopus, Web of Science, PubMed, PubMed Central, Dimensions or Google Scholar exported from Publish or Perish. Is mandatory that there be at least 2 different files from 2 different databases.
PyMedX is a Python library that provides access to PubMed.
API https://reach-api.nrnb-docker.ucsd.edu WebApp https://reach.nrnb-docker.ucsd.edu
FAIR Jupyter: a knowledge graph for semantic sharing and granular exploration of a computational notebook reproducibility dataset.
Extract relational tables from PubMed Central.
Provides link of the full-text article upon giving PubMed's PMID