FDI Laboratory's repositories
NIF-Ontology
NIF Standard Ontologies (NIFSTD)
sparc-curation
code and files for SPARC curation workflows
bio-answerfinder
A question answering system for biomedical literature
Antibody-Watch
Antibody Watch: Text Mining Antibody Specificity from the Literature
bio_electra
Bio-Electra - Small and efficient discriminatively pre-trained language representation models for biomedical text mining
SciCrunch-Portal
SciCrunch Portal
resource_disambiguator
Batch processes for RDW
API-Handbook
Gitbook with information and documentation of APIs and services provided by FAIR Data Informatics Lab
dkNET-Repository-Finder-Data
Repository for the data behind the repository finder
paperpdf2xml
A set of Python 3 CLI to convert scientific papers in PDF format to XML documents with sections and tables.
API-Handbook-Docs
Repository for API Handbook Gitbook
BICCN-Infrastructure-Draft
Documentation about BICCN Infrastructure and Data Policies
BioMart-harvester
A BioMart harvester written in PHP to crawl BioMart repositories.
BulkChanger
A tool to perform a mass change to a desired element in a desired property in a MediaWiki that implements Semantic MediaWiki and Semantic Forms.
CINERGI-PROV
Data from CINERGI pipeline and clients to connect to the server
connectivity-re
Code/data repository for ANS connectivity relation extraction
FAIR-Rich-Metadata
Specification of FAIR Rich Metadata
Foundry-Docs
Gitbook repository for Foundry ecosystem documentation
Navigator
A javascript toolkit to embed data and literature search utilizing the Neuroscience Information Framework REST search services.
OAI-PMH-harvester
An OAI-PMH harvester written in PHP to crawl OAI repositories. Includes ability to update and restart prior crawls.
ontoquest
Ontoquest webservice
SPARC-Citations
Scripts to aggregate SPARC Citation information