cilia

There are 1 repository under cilia topic.

• CiliaQ

  hansenjn / CiliaQ

  An ImageJ plugin to quantify ciliary shape, length, and fluorescence.

  ciliaq-workflowimagej-pluginciliumciliaprimary-ciliacilium-lengthciliary-fluorescencetime-lapse-imagingconfocal-imagesfluorescence-microscopy-imagingimagej-plugins
  Language:Java 6

• thekaplanlab / CiliaMiner

  CiliaMiner: an integrated database for Ciliopathy Genes and Ciliopathies

  ciliaciliopathydatabaser
  Language:R 6

• icemtel / carpet

  Python package to study systems of coupled phase oscillators

  physicsdynamicsoscillatory-networksoscillatorcilia
  Language:Python 5

• dsp-uga / team-huddle

  This repository contains few Convolution based networks implemented for detecting cilia which is completed on CSCI 8360, Data Science Practicum at the University of Georgia, Spring 2018.

  fcntiramisucnnciliacnn-keraskeraskeras-neural-networkstensorflowdata-science
  Language:Python 3

• icemtel / stokes

  Stokes: Python package to create triangulated surface mesh and solve hydrodynamic Stokes equation

  physicshydrodynamicsmeshciliastokes-flow
  Language:Python 3

• thekaplanlab / CilioGenics_Analysis

  CilioGenics is an integrated method for predicting the ciliary genes

  clusteringclusterciliascrna-seq-analysiscomparative-genomics
  Language:R 2

• dsp-uga / goucher

  Team Goucher implementation of project 4 ( Cilia Segmentation ) of Data Science Practicum Spring 2018

  keras-neural-networksu-netciliasegmentationdatasciecepython
  Language:Jupyter Notebook 1

• dsp-uga / kampf

  Semantic Segmentation on Cilia Images Using Tiramisu Network in PyTorch.

  pytorchtiramisutiramisu103densenetciliaciliary-motionciliary-beat-frequencycomputer-visionsegmentationsemantic-segmentationdata-scienceopen-sourcedeep-learningdeep-neural-networks
  Language:Jupyter Notebook 1

• quinngroup / cilia-metrics

  Scripts for computing metrics from ciliary motion.

  ciliaciliary-motionciliary-beat-frequencycbfpower-spectral-densityfftsignal-processingpythonnumpy
  Language:Jupyter Notebook 1

• quinngroup / JupyterDay2018-Cilia-Segmentation

  Presentation materials for my talk on cilia segmentation for Jupyter Day ATL.

  pythonjupyteripywidgetscilia
  Language:Jupyter Notebook 1

• icemtel / reconstruct3d_opt

  Python code to reconstruct a three-dimensional space curve from two orthogonal two-dimensional projections.

  curveoptimizationphysicsciliaspace-curve
  Language:Python 0

• thekaplanlab / Protocol-for-determining-the-average-speed-and-frequency-of-kinesin-and-dynein-driven-IFT

  ciliaintraflagellar-transport
  Language:R 0

• ToniWestbrook / imagej-plugins

  Plugins for ImageJ/FIJI

  unhimagejfijiimage-analysisimage-processingbioinformaticsciliacell-countingtissue-identification
  Language:Python 0

• quinngroup / DLMIA17

  MICCAI conference

  miccai2017deep-learningmedical-imagingciliary-motionciliadlmia17
  Language:TeX