introgression

There are 0 repository under introgression topic.

• jbpease / dfoil

  DFOIL: Introgression Testing for Five Taxa

  introgressionhybridizationphylogeneticsmolecular-evolution
  Language:Python 28

• btmartin721 / ClineHelpR

  Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables

  genomic-clinebgcintrogressionintrogressrr-packagechromosomeideogramenmevalmaxentrasterplothybridizationhybrid-zone
  Language:R 16

• xin-huang / sstar

  Detecting Archaic Introgression from Population Genetic Data with S*

  introgressionpopulation-genomicspython
  Language:Python 6

• rancilhac / Introgression-tests-from-gene-trees

  Script for detecting signals of introgression in large set of gene trees from unlinked markers

  introgression-testsintrogressionphylogenetic-trees
  Language:R 3

• btmartin721 / phylip2eigenstrat

  Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile

  admixtoolseigenstratradddradhybridizationintrogressionf-statisticsd-statisticadmixturepopulation-geneticspopulation-genomicsrad-sequencingddrad-sequencingpyradgenophylipsnpsind
  Language:Python 2

• pievos101 / Introgression-Simulation

  Introgression Simulation using ms and seq-gen

  msseq-genintrogression
  Language:R 2

• bjarnebartlett / Interspecific-Breeding-History-of-Hawaiian-Macadamia

  Revealing the Interspecific Breeding History of Hawaiian Macadamia through Transcriptome Sequencing and Analysis 

  genomicsintrogressionmacadamia
  Language:R 1

• nicolo-tellini / intropipeline

  Detection of Saccharomyces paradoxus DNA across Saccharomyces cerevisiae, and vice versa.

  illumina-sequencingintrogressionhybridsaccharomyces
  Language:R 1

• rtfcoimbra / Coimbra-et-al-2023_BMCBiol

  Code used to analyse WGS data of giraffe in Coimbra et al. 2023

  bioinformaticsgene-flowgenomicsgiraffehybridizationintrogressionpopulation-genomicsspeciation
  Language:R 1

• btmartin721 / makePopMap

  Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files

  structurepopulation-genomicspopulation-geneticspopulation-structureadmixtureintrogressionhybridizationphylipplink-filespopmappedigreestructure-file
  Language:Python 0

• nicolo-tellini / ils-pipeline

  ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.

  illumina-sequencingintrogressionsaccharomyces-cerevisiaewhole-genome-sequencingabba-baba-testincomplete-lineage-sorting
  Language:R 0

• SvitlanaLukicheva / FILET

  A modified version of FILET (software for detecting introgression using supervised machine learning), to use for introgression detection between Gonioctena intermedia and Gonioctena quinquepunctata

  introgressionmachine-learning
  Language:C 0

• zhuochenbioinfo / 3KRG-HAP

  Haplotype marker based on 3,000 Rice Genomes for subpopulation inference

  population-geneticsintrogressionancestryrice
  Language:Perl 0

• xin-huang / gaia

  Genomic Analysis of Introgressed Alleles with Machine Learning

  machine-learningpopulation-genomicsintrogression
  Language:Python