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Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
Script for detecting signals of introgression in large set of gene trees from unlinked markers
Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
Introgression Simulation using ms and seq-gen
Revealing the Interspecific Breeding History of Hawaiian Macadamia through Transcriptome Sequencing and AnalysisÂ
Detection of Saccharomyces paradoxus DNA across Saccharomyces cerevisiae, and vice versa.
Code used to analyse WGS data of giraffe in Coimbra et al. 2023
Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files
ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.
A modified version of FILET (software for detecting introgression using supervised machine learning), to use for introgression detection between Gonioctena intermedia and Gonioctena quinquepunctata
Haplotype marker based on 3,000 Rice Genomes for subpopulation inference