Computer Technologies Laboratory

fgsea

Fast Gene Set Enrichment Analysis

ITMO_FS

Feature selection library in python

GADMA

Genetic Algorithm for Demographic Model Analysis

phantasus

Visual exploratory analysis of gene expression data

metafast

Fast metagenome analysis toolkit

metacherchant

GScour

Genome-wide detection of positive selection

mwcsr

An R package for solving maximum-weight connected subrgaph problem and it's variants

phantasusLite

metafx

MetaFX – library for feature extraction from whole-genome metagenome sequencing data

gatom

Finding an Active Metabolic Module in Atom Transition Network

scNavigator

Single Cell Navigator

parallel-rearrangements

parallel rearrangements caller

evoguess-ai

Component for finding decomposition sets and estimating hardness of SAT instances.

virgo-solver

Solver for SGMWCS and GMWCS problems

evoguess

Component EvoGuess v2.1 for finding decomposition sets and estimating hardness of SAT instances.

GAMclust

GAM-clustering: Metabolic Modules Derivig From RNAseq Data

HiCT

Combines all HiCT-related repositories as submodules

phantasus.js

JavaScript matrix visualization and analysis

metafx_old

true-dist-infer

BandageNG

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

dadi_adjoint_state

The adjoint-state method for demographic inference

HiCT_JVM

HiCT_Library

Library for interaction with Hi-C contact maps in HDF5 format

HiCT_Server

HiCT_Utils

Utilities for interaction with HiCT library and data format.

HiCT_WebUI

phantasus-doc

Phantasus documentation

phantasus-preimage

Opencpu + Bioconductor + devtools docker image to speed up phantasus builds