eigenstrat

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ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files
A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert between formats, merge datasets or subset by individuals in each of the formats.
vcf plink eigenstrat
Language:Shell 16
btmartin721 / phylip2eigenstrat
Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
admixtools eigenstrat rad ddrad hybridization introgression f-statistics d-statistic admixture population-genetics population-genomics rad-sequencing ddrad-sequencing pyrad geno phylip snps ind
Language:Python 2

ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files