Geek Repo
Pombert lab @ IIT
Location:Illinois Institute of Technology
Home Page:http://www.pombertlab.org
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The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
A2GB is a pipeline that will transform the genome annotation files exported from Apollo in preparation for sequence submission to NCBI’s GenBank.
This repository contains scripts from published or submitted manuscripts.
The SSRG pipeline was created as a simple and focused tool to investigate genetic diversity between genomes.
This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.
Contains old miscellaneous scripts for genomics. No longer maintained.
The QueGO pipeline identifies potential homologs to proteins related to specific functionality.
The A2A pipeline guides users from genome assembly to annotations.
Fork from AlphaFold to ensure compatibility with 3DFI
Miscellaneous scripts
A simple pipeline to create and search HMM models against reference protein databases.
