medspacy's repositories
sectionizer
A rule-based Python module for spitting documents into sections.
quickumls_data_building
Code for building QuickUMLS data resources from UMLS source data
cycontext_old
A Python implementation of the ConText algorithm for clinical text concept assertion using the spaCy framework
medspaCy_MedInfo_2023
Supplementary information for the medspaCy workshop presentation at MedInfo 2023 in Sydney, Australia
nlp_preprocessor
SpaCy component for modifying the string of a doc before tokenizing.
target_matcher
A wrapper class for extended rule-based matching in spaCy.
nlp_postprocessor
A spaCy component for executing custom logic at the end of a pipeline.
med_disposition_n2c2_2022
Our solution for n2c2 2022 challenge task1 medication disposition
medspacy_io
A collection of modules to facilitate reading text from various sources and writing to various sources.
medspacy_plyvel
Plyvel, a fast and feature-rich Python interface to LevelDB
pysimstring
Python Simstring bindings for Linux, OS X and Windows
relation_extraction
Spacy components for Adverse Drug Event (ADE) clinical text processing. This work comes from University of Utah work on the n2c2 2018 and MADE 1.0 ADE data challenges.
spacy_tokenizer_infix
Small repo to explore options to fix spacy's infix issue
unqlite-python
Python bindings for the UnQLite embedded NoSQL database