MUSC-TBIC

etude-engine

ETUDE (Evaluation Tool for Unstructured Data and Extractions) is a Python-based tool that provides consistent evaluation options across a range of annotation schemata and corpus formats

corpus-utils

A suite of tools for working with corpora (collections of texts), including the ability to extract general descriptive stats and reshape lines.

lexicon-tools

decovri

Data Extraction for COVID-19 Related Information: A natural language processing (NLP) application for unstructured clinical notes developed as part of our pandemic response efforts

ots-clinical-sectionizer

tools for off-the-shelf clinical note sectionizing

2010-i2b2-VA-Challenge-Corpus-Augmentations

annotation_schemas

Centralized repository for annotations schemas used across our various Natural Language Processing (NLP) and extraction projects

article-addenda

Addenda, errata, corrigenda, and appendixes for TBIC's publications

ensemble

Ensemble method framework

etude-engine-configs

ots-clinical-context-attributes

Off-the-Shelf Tools for Training and Running Context Attribute Extraction on Unstructured Clinical Texts

ots-ensemble-systems

Off-the-Shelf Ensemble Systems

pipeline-test-harness

A collection of tools for evaluating the downstream impact of upstream (pre-processing) natural language processing (NLP) components