chia-pet

There are 0 repository under chia-pet topic.

• cLoops

  YaqiangCao / cLoops

  Accurate and flexible loops calling tool for 3D genomic data.

  bioinformaticschia-pethichipchromatin-interaction3d-genomehi-cclusteringdbscanpythonngsalgorithmchromatin-loopspipelinesequencingstripeschromatin-stripesloops-callingtooltrac-loopingexample-data
  Language:Python 108

• YaqiangCao / cLoops2

  Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.

  bioinformatics-toolchromatin-interactioncloops2clusteringloopspeaks3d-genome3d-genome-visualizationdomainsstripespythonchia-pethi-ctrac-loopinghichipdifferential-enriched-loopsun-limited-resolutionnext-generation-sequencingrehoboammontage
  Language:Python 38

• billgreenwald / pgltools

  Paired Genomic Loci Tool Suite

  pglpgl-fileslocipaired-locilocushi-cchia-petcontactschromosomegenomicsgenetics
  Language:Python 28

• kkrismer / idr2d

  Irreproducible discovery rate for genomic interaction data

  chia-pethichiphicr-packagebioinformatics
  Language:R 3

• sirusb / R3CPET

  3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process

  chia-petchromatin-interactiontranscription-factodirichlet-process-mixtures
  Language:R 3

• jhammelman / spatzie

  Identification of enriched motif pairs from chromatin interaction data

  transcription-factorsbioinformaticsr-packagehicchia-pethichip
  Language:R 2

• LTLA / archive-InteractionSet

  An archived version of the InteractionSet repository, see https://github.com/LTLA/InteractionSet for the active version.

  rbioconductorhi-cchia-pet
  Language:R 2

• 4DNucleome / tad_compare

  Compare different sets of TADs inferred from Hi-C data (or other 3C technique) using different methods.

  genomicstadshi-cchia-petccd3dgenomebioinformatics
  Language:Python 1

• gifford-lab / spatzie

  Identification of enriched motif pairs from chromatin interaction data

  r-packagechia-pethichiphicbioinformatics
  Language:R 1

• nlawlor / Multiomic_Browser

  An R shiny application for visualization of EndoC-bH1 and human islet genomic data

  shinyrgenomics-visualizationbrowserisletmulti-omicsdata-visualizationhi-cchia-petatac-seqrna-seqhuman-isletsvisualizationdiabetesbeta-cells
  Language:R 1

• younglab / origami

  Statistical Modeling of ChIA-PET interactions

  chia-petchromatinchromatin-interaction
  Language:Shell 1

• LTLA / BiocISet2016

  Technical note for the InteractionSet package

  rbioconductorhi-cchia-pet
  Language:TeX

• LTLA / dacpet

  An R package for ChIA-PET data analysis

  rchia-pet
  Language:R