Jennifer Hammelman's repositories
ReprogrammingRecovery
Code for creating consensus motif database and performing motif enrichment
DeepAccess
Code for training, testing, and motif extraction from multilabel DNA sequence ensemble of convolutional neural networks
beautiful-jekyll
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
bioconda-recipes
Conda recipes for the bioconda channel.
deepaccess-package
Training an interpretation of ensemble of convolutional neural networks for multi-task functional genomic classification tasks.
HSSP_Python
For the HSSP course Intro to Python with Games
jhammelman.github.io
New Personal Website
keras
Deep Learning for humans
pysamstats
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
scansite-tools
Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.
visual-attribution
Pytorch Implementation of recent visual attribution methods for model interpretability