Nathan Lawlor's repositories
PBMC_CITEseq
CITE-seq profiling of human PBMCs at baseline and activation conditions
multiClust
multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles
Genome_Research_2017
Code associated with manuscript about human islet single cell transcriptomics
Multiomic_Browser
An R shiny application for visualization of EndoC-bH1 and human islet genomic data
awesome-datascience
:memo: An awesome Data Science repository to learn and apply for real world problems.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
CellView
Simple App to visualize single cell datasets
community-starter-kit
Short Description of Project goes here
iasvaExamples
IA-SVA data examples
intro-html
A robot powered training repository :robot:
jekyll-seo-tag
A Jekyll plugin to add metadata tags for search engines and social networks to better index and display your site's content.
markdown-here
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
nlawlor.github.io
My personal website using Dean Attali's Beautiful Jekyll can be found here
OCram85.com
My personal blog about PowerShell and automation in general.
powsimR
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
single-cell
Methods for pre-processing, analysis, and visualization of single cell genomics data
singleCellSeq
Batch effects and the effective design of single-cell gene expression studies
training-kit
Open source on demand courses and cheat sheets for Git and GitHub
VerifyBamID
A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.