nlawlor

V-SVA

V-SVA: An R Shiny application for detecting and annotating hidden sources of variation in single cell RNA-seq data

PBMC_CITEseq

CITE-seq profiling of human PBMCs at baseline and activation conditions

multiClust

multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles

Genome_Research_2017

Code associated with manuscript about human islet single cell transcriptomics

Multiomic_Browser

An R shiny application for visualization of EndoC-bH1 and human islet genomic data

awesome-datascience

:memo: An awesome Data Science repository to learn and apply for real world problems.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bokeh

Interactive Web Plotting for Python

CellView

Simple App to visualize single cell datasets

community-starter-kit

Short Description of Project goes here

d3-book

Code examples for “Interactive Data Visualization for the Web”

github-pages-with-jekyll

iasvaExamples

IA-SVA data examples

intro-html

A robot powered training repository :robot:

jekyll-seo-tag

A Jekyll plugin to add metadata tags for search engines and social networks to better index and display your site's content.

markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

markdown-portfolio

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

nlawlor.github.io

My personal website using Dean Attali's Beautiful Jekyll can be found here

OCram85.com

My personal blog about PowerShell and automation in general.

oneliners

Useful bash one-liners for bioinformatics.

powsimR

Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.

Repo-2017

Python codes in Machine Learning, NLP, Deep Learning and Reinforcement Learning

reveal.js

The HTML Presentation Framework

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

scrublet

Detect doublets in single-cell RNA-seq data

single-cell

Methods for pre-processing, analysis, and visualization of single cell genomics data

singleCellSeq

Batch effects and the effective design of single-cell gene expression studies

training-kit

Open source on demand courses and cheat sheets for Git and GitHub

VerifyBamID

A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.