chromatin-loops

There are 0 repository under chromatin-loops topic.

• cLoops

  YaqiangCao / cLoops

  Accurate and flexible loops calling tool for 3D genomic data.

  bioinformaticschia-pethichipchromatin-interaction3d-genomehi-cclusteringdbscanpythonngsalgorithmchromatin-loopspipelinesequencingstripeschromatin-stripesloops-callingtooltrac-loopingexample-data
  Language:Python 108

• koszullab / chromosight

  Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

  hi-cgenomicschromatin-loopspattern-detection
  Language:Python 59
• mustache

  ay-lab / mustache

  Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

  chromatin-loopsgenomicshi-cmicro-c
  Language:Python 55
• topology_loop_caller

  aleskunder / topology_loop_caller

  Chromatin loop caller using Topological Data Analysis based on Hi-C data

  bioinformaticsbioinformatics-toolchromatinchromatin-loopshi-chic-analysispersistent-homologytopological-data-analysis
  Language:Python 3

• sa501428 / clear-tools

  Chromatin Landscape Exploration, Analysis, and Research Tools

  chromatin-loopschromatin-structuredna-loopshi-c
  Language:Java 2

• FAhtisham / DCNN-YY1

  The repository contains the codes for the prediction of YY1 chromatin loops using densely connected neural network based on Kmer embeddings.

  bioinformaticschromatin-loopsdeep-learningdna-sequence-analysisgenomics
  Language:Jupyter Notebook 1

• yufanzhouonline / HiSIF

  HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops

  hi-cloopschromatingenomechromatin-interactionchromatin-loopschromatin-structureenhancer
  Language:C++ 1