cell-type-identification
There are 1 repository under cell-type-identification topic.
dmcable / spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
Language:HTML 394- clustermole
igordot / clustermole
Unbiased single-cell transcriptomic data cell type identification
Language:R 14 jr-leary7 / SCISSORS
SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with an eye towards identifying rare cell types.
Language:R 13- Cellcano
marvinquiet / Cellcano
Supervised cell type identification for scATAC-seq data
Language:Python 13 - Language:Jupyter Notebook 8
combio-dku / HiCAT
High precision, marker-based, hierarchical cell-type annotation tool for single-cell RNA-seq data
Language:Jupyter Notebook 7- Language:R 2
MarkerCount is a python3 cell-type identification toolkit for single-cell RNA-Seq experiments.
Language:Jupyter Notebook 1Farber-Lab / BoneCellType
R package to assign an initial bone-related cell type
Language:R 0- Language:Python
pwwang / hitype
Hierarchical and high-resolution cell-type identification for single-cell RNA-seq data based on ScType.
Language:R
