celltype-annotation

There are 0 repository under celltype-annotation topic.

• FelixTheStudent / cellpypes

  Cell type pipes for R

  celltype-annotationclassification-algorithmscrnaseqsingle-cell-rna-seq
  Language:R 49
• ELeFHAnt

  praneet1988 / ELeFHAnt

  Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classifiers 1) RF 2) SVM and 3) LR

  single-cellcelltype-annotationharmonizationngs-analysisscalabilitysingle-cell-rna-seqcell-biologyannotation-toolmachine-learningclassification
  Language:R 21

• DavisLaboratory / scDECAF

  Reference-free celltype and phenotype annotation in single cell RNAseq by learning geneset representations

  celltype-annotationscrna-seq
  Language:R 11
• Cellcano

  marvinquiet / Cellcano

  Supervised cell type identification for scATAC-seq data

  bioinformaticscell-type-classificationcell-type-identificationcelltype-annotationsingle-cellsupervised-classification-methods
  Language:Python 10

• ScialdoneLab / CIARA_python

  Implementation of entropy of mixing algorithm in python

  bioinformaticsbioinformatics-algorithmsbioinformatics-analysisbioinformatics-toolcelltype-annotationrna-seqrna-seq-analysisfeature-selectionopensource
  Language:Jupyter Notebook 7

• MohamedOmar2020 / QuPath_scripts

  Custom groovy scripts for QuaPath

  celltype-annotationdigital-pathologygroovy-scriptmasked-image-modelingqupathqupath-script
  Language:Groovy

• shahrozeabbas / fsctype

  Modification of the Original ScType Method for Barcode Annotation using KNN Algorithm

  annotation-toolseuratsingle-cellspatialtranscriptomicscelltype-annotation
  Language:R