celltype-annotation

There are 0 repository under celltype-annotation topic.

scPRINT
cantinilab / scPRINT
🏃 The go-to single-cell Foundation Model
ai batch-correction cell-biology celltype-annotation denoising embeddings foundation-models foundational-datasets gene-regulatory-network large-cell-models large-language-models llms open-source rnaseq single-cell-rna-seq sprint zero-imputation zero-shot-learning
Language:Jupyter Notebook 117
FelixTheStudent / cellpypes
Cell type pipes for R
celltype-annotation classification-algorithm scrnaseq single-cell-rna-seq
Language:R 52
ELeFHAnt
praneet1988 / ELeFHAnt
Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classifiers 1) RF 2) SVM and 3) LR
single-cell celltype-annotation harmonization ngs-analysis scalability single-cell-rna-seq cell-biology annotation-tool machine-learning classification
Language:R 23
Cellcano
marvinquiet / Cellcano
Supervised cell type identification for scATAC-seq data
bioinformatics cell-type-classification cell-type-identification celltype-annotation single-cell supervised-classification-methods
Language:Python 13
ScialdoneLab / CIARA_python
Implementation of entropy of mixing algorithm in python
bioinformatics bioinformatics-algorithms bioinformatics-analysis bioinformatics-tool celltype-annotation feature-selection opensource rna-seq rna-seq-analysis
Language:Jupyter Notebook 9
shahrozeabbas / fsctype
Modification of the Original ScType Method for Barcode Annotation using KNN Algorithm
annotation-tool celltype-annotation seurat single-cell spatialtranscriptomics
Language:R 0
MohamedOmar2020 / QuPath_scripts
Custom groovy scripts for QuaPath
celltype-annotation digital-pathology groovy-script masked-image-modeling qupath qupath-script
Language:Groovy