nikostr

dna-seq-deepvariant-glnexus-variant-calling

A Snakemake workflow for variant calling with DeepVariant, and optionally joint variant calling using GLnexus.

alv

A console-based alignment viewer

binp29-git

bioconda-recipes

Conda recipes for the bioconda channel.

developer-utilities

Zetkin developer utility scripts

DifCover

The DifCover pipeline aims to identify regions in a reference genome for which the read coverage of a sample1 to the reference is significantly different from the read coverage of a sample2

dna-seq-variant-calling

Intro_to_R_2022

Exercise material and slides for the Evomics Workshop on Genomics Introduction to R.

kGWASflow

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

LayerNormLSTM

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

nikostr.github.io

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

reversing_statview

parquetize

R package that allows to convert databases of different formats to parquet format

read-mapping

Snakemake module for read mapping using BWA-MEME, pbmm2 or minimap2. Experimental.

SexFindR

Skmer

Fast and accurate tool for estimating genomic distances between genome-skims

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-workflow-catalog

A statically generated catalog of available Snakemake workflows

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

stract-optics

tldr

📚 Collaborative cheatsheets for console commands