nikostr's repositories
dna-seq-deepvariant-glnexus-variant-calling
A Snakemake workflow for variant calling with DeepVariant, and optionally joint variant calling using GLnexus.
bioconda-recipes
Conda recipes for the bioconda channel.
developer-utilities
Zetkin developer utility scripts
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Intro_to_R_2022
Exercise material and slides for the Evomics Workshop on Genomics Introduction to R.
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parquetize
R package that allows to convert databases of different formats to parquet format
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read-mapping
Snakemake module for read mapping using BWA-MEME, pbmm2 or minimap2. Experimental.
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snakemake-workflow-catalog
A statically generated catalog of available Snakemake workflows
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
tldr
📚 Collaborative cheatsheets for console commands
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