transcriptional-regulatory-network

There are 0 repository under transcriptional-regulatory-network topic.

Taiji-pipeline / Taiji
All-in-one analysis pipeline
atac-seq-pipeline rna-seq-pipeline single-cell-atac-seq single-cell-rna-seq transcriptional-regulatory-network
Language:Haskell 33
BrentLab / NetProphet_2.0
A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.
transcription-factors transcriptional-regulatory-network gene-regulation gene-expression
Language:R 12
Danko-Lab / tfTarget
Identify transcription factor-enhancer/promoter-gene network from run-on sequencing data
chro-seq enhancer-prediction pro-seq transcriptional-regulatory-network
Language:R 7
soumitag / multiSLIDE
Multi-omics Systems-Level Interactive Data Exploration (multiSLIDE)
multi-omics omics visualization heatmap clustering transcriptional-regulatory-network protein-protein-interaction
Language:Java 4
BrentLab / Dual_Threshold_Optimization
Dual threshold optimization for identifying convergent evidence: TF binding locations and TF perturbation responses.
transcriptional-regulatory-network transcription-factors transcription-factor-binding transcription-factor-perturbation
Language:Python 3
aqlaboratory / hth-dna-db
Database of HTH-DNA complexes
protein-dna-interactions machine-learning transcription-factor-binding transcriptional-regulatory-network protein-structure
Language:Mathematica 1
gao-lab / FunTFBS
A package to identify functional TFBS
tfbs transcriptional-regulatory-network
Language:Perl 1
NhanNguyen000 / RegOmics
This repository is the code source for the RegOmics tool - Regulatory extraction for Omics data.
bioinformatics-tool omics omics-data-integration transcriptional-regulatory-network
Language:R 1
PeterDeWeirdt / MTL_JULIA
Multitask Learning for Transcriptional Regulatory Network Inference in Julia
multitask-learning transcriptional-regulatory-network julia-language computational-biology
Language:Fortran 1
gibbs-hmm / Gibbs-Motif-Sampler
Gibbs 3.2 formerly located at http://ccmbweb.ccv.brown.edu/gibbs/gibbs.html
dna rna gibbs motif-discovery transcription-factor-binding transcriptional-regulatory-network
Language:C 0
JosephRyanPeterson / PlogP_TRN
Reconstruct a Transcriptional Regulatory Network using the principle of Maximum Entropy.
transcription-factors gene-expression maximum-entropy transcriptional-regulatory-network regulatory-network systems-biology
Language:Julia 0
sriram-lab / gemini
Integrating the transcriptional regulatory network with genome-scale metabolic models.
genome-scale-modeling transcriptional-regulatory-network matlab constraint-based-modeling metabolism
Language:MATLAB 0
zhoujj2013 / motifpizza
Screen tf motif within provided regions.
transcription-factors transcriptional-regulatory-network
Language:Perl