enhancer-prediction

There are 0 repository under enhancer-prediction topic.

yupenghe / REPTILE
Predicting regulatory DNA elements based on epigenomic signatures
enhancer-prediction bioinformatics bioinformatics-algorithms epigenomics dna-methylation
Language:Python 26
EngreitzLab / gene_network_evaluation
Evaluation framework for computationally inferred gene networks from single-cell data.
enhancer-prediction gene-co-expression-network gene-regulatory-network single-cell-genomics
Language:HTML 8
Danko-Lab / tfTarget
Identify transcription factor-enhancer/promoter-gene network from run-on sequencing data
transcriptional-regulatory-network pro-seq chro-seq enhancer-prediction
Language:R 7
iatahmid / chilenpred
enhancer-prediction sequence-analysis hilbert-curve cnn-classification
Language:Jupyter Notebook 5
epiRomics
Huising-Lab / epiRomics
An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
enhancer atac-seq r-package data-visualization chip-seq histone chromatin-accessibiity enhancer-prediction transcription-factors transcription-factor-binding regulatory-network epigenetics epigenomics multi-omics rna-seq ucsc-browser regulome-analysis
Language:HTML 4
slrvv / CENTRE
computational-biology enhancer-gene enhancer-prediction machine-learning r-package xgboost-classifier
Language:R 2